FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_EHRRW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia ruminantium (strain Welgevonden) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 54/130 (41.54%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  313 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            FR+G G+D+HR +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A SS F+ EA +   E GY I N D  +I  +PK+ PY   ++  +++    DP
Sbjct:   10 FRIGIGYDVHRFDNINNDDSNTSITICGIKINYHKKIIAHSDGDVGLHALADAILGAVGCGSIGQHFPNTDKKWKNAESSHFVIEAQKKAQERGYIISNADIIIICEQPKIMPYALEMQHYIAQFTSIDP 139          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_EHRRG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia ruminantium (strain Gardel) GN=ispF PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 54/130 (41.54%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  313 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            FR+G G+D+HR +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A SS F+ EA +   E GY I N D  +I  +PK+ PY   ++  +++    DP
Sbjct:   10 FRIGIGYDVHRFDNINNDDSNTSITICGIEINYHKKIIAHSDGDVGLHALADAILGAVGCGSIGQHFPNTDQKWKNAKSSHFVIEAQKKAQERGYIISNADIIIICEQPKIMPYALEMQHYIAQFTSIDP 139          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLS 663
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I   PK+ PY   +R+NLS
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLS 117          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLS 663
            R+G+GFD+H      PLIIGG+ +P+ +G  AHS+GD+L+H ++DA+LGA  + DIG  FP  D K+K   S + +K   + +    Y I N+D T+I   PK+  Y   +R+N++
Sbjct:    2 RIGYGFDIHAFGSIKPLIIGGVQIPYNKGLIAHSNGDLLIHSLIDALLGATAMGDIGTFFPSEDKKYKNINSRILLKYIWKRIYLKNYRISNIDITIITETPKILSYIFLMRSNIA 117          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLS 663
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I   PK+ PY   +R+NLS
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLS 117          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BUCA5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLS 663
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I   PK+ PY   +R+NLS
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLS 117          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_DESPS (Bifunctional enzyme ispD/ispF OS=Desulfotalea psychrophila GN=ispDF PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPY 636
            R+GHGFD H+L     LI+GG+ +P+  G   HSD DVL+H + DA+LGA+G  DIG+ FPDS   +K   S   ++  ++ + E  Y+IGN D ++I   PKL+PY
Sbjct:  232 RIGHGFDAHQLVEKRRLILGGVEIPYHLGLAGHSDADVLVHALCDALLGAIGAGDIGRHFPDSSDAFKDIYSIRLLESVMQKVGELNYKIGNADISVICQAPKLAPY 338          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_SPHWW (Bifunctional enzyme ispD/ispF OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=ispDF PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.046e-21
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R   GFD+H    G  + +GG+ + H+R    HSD DV LH + DA+LG +   DIG  FP SD +WKGA S++F+  A  L+  AG  +  +D T+I   PK+ P++  IR  ++ LLG
Sbjct:  225 RTAMGFDVHGFTAGDGVQLGGVRIAHDRALAGHSDADVALHALTDALLGTIAAGDIGSHFPPSDQRWKGADSAMFLAHARDLVAAAGGIVDFVDLTIICEAPKVGPHRAAIRDRIAALLG 344          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_PELUB (Bifunctional enzyme ispD/ispF OS=Pelagibacter ubique GN=ispDF PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.046e-21
Identity = 49/123 (39.84%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            + G GFD+HRL P   L +GG+ +P   G   HSDGD +LH V DAILGA  + DIG+ F D + K+K   S++ + E ++   + GY I NLD  +I  +PK+  YK+ I   ++++    P
Sbjct:  215 KFGIGFDVHRLVPNKKLYLGGVKIPSPIGTLGHSDGDPVLHAVTDAILGACSMGDIGEKFSDKNKKFKNIRSTILLSEIIKQTLKKGYLINNLDINIITQKPKIQKYKKQILNCIAKICNISP 337          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CELJU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 43/110 (39.09%), Postives = 71/110 (64.55%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPY 636
            +  R+G G+D+H    G  ++IGG+ +PH  G  AHSDGDVLLH + DA+LGA+ L DIG+ FPD+D +++ A S   ++     + + G+++ N D T++   P+++ Y
Sbjct:    1 MSMRIGQGYDVHAFGEGEKIVIGGVVIPHHHGLVAHSDGDVLLHALCDALLGAVALGDIGKHFPDTDMQYRNADSRSLLRMVYAKVSQHGWKLANADMTIVAQAPRMASY 110          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_EHRRW8.007e-2241.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRRG8.007e-2241.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCAT8.007e-2243.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCAP8.007e-2240.522-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCAI8.007e-2243.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCA58.007e-2243.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DESPS8.007e-2244.86Bifunctional enzyme ispD/ispF OS=Desulfotalea psyc... [more]
ISPDF_SPHWW1.046e-2140.83Bifunctional enzyme ispD/ispF OS=Sphingomonas witt... [more]
ISPDF_PELUB1.046e-2139.84Bifunctional enzyme ispD/ispF OS=Pelagibacter ubiq... [more]
ISPF_CELJU1.784e-2139.092-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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