FC875314
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis GN=ispF PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21 Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H +EPG P + G+ P GC HSDGDV +H + DA+L A GL DIG++F DP+W+G + ++ V L+ + GY +GN +I RPK+ + + LS LL A Sbjct: 6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ispF PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21 Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H +EPG P + G+ P GC HSDGDV +H + DA+L A GL DIG++F DP+W+G + ++ V L+ + GY +GN +I RPK+ + + LS LL A Sbjct: 6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ispF PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21 Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H +EPG P + G+ P GC HSDGDV +H + DA+L A GL DIG++F DP+W+G + ++ V L+ + GY +GN +I RPK+ + + LS LL A Sbjct: 6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ispF PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21 Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H +EPG P + G+ P GC HSDGDV +H + DA+L A GL DIG++F DP+W+G + ++ V L+ + GY +GN +I RPK+ + + LS LL A Sbjct: 6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis GN=ispF PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21 Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H +EPG P + G+ P GC HSDGDV +H + DA+L A GL DIG++F DP+W+G + ++ V L+ + GY +GN +I RPK+ + + LS LL A Sbjct: 6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_DESDG (Bifunctional enzyme ispD/ispF OS=Desulfovibrio desulfuricans (strain G20) GN=ispDF PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21 Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 1 Query: 319 VGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 VG G+D+HR G P+ +GG+ + G AHSDGDVLLH + DA+LG +GL DIG +FPD+D + A S+V + E + AG I ++D T+I P+++P+++ I N+ + D Sbjct: 241 VGWGYDVHRFGSDGRPMKLGGVPIAGGPGVIAHSDGDVLLHALTDAVLGCMGLGDIGMLFPDTDAAYDNADSAVMLNEVLEKARNAGLLITHVDLTIITQIPRITPWRDQIHKNICRITRLD 362
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_RHOSR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=ispF PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21 Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H +E G P + G+ E GC HSDGDV +H + DA+L A GL D+G +F P+W G + + E RL++E +++ N +I RPK+ P + + LS++LGA Sbjct: 2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEEDDFDVANAAVQVIGNRPKIGPRRNEAQKVLSDILGA 122
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BLOPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Blochmannia pennsylvanicus (strain BPEN) GN=ispF PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21 Identity = 47/117 (40.17%), Postives = 77/117 (65.81%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666 R+G+GFD+H+ PL IGG+++P +G +AHSDGDV++H ++DA+LGA DIG +FPD+D K+ S ++ A + G+ + N+D T+IL PK++ Y ++ +LS+ Sbjct: 3 RIGYGFDVHQFGGCRPLTIGGVSIPCMKGIKAHSDGDVMMHSLIDALLGAACCGDIGSMFPDTDAKYNNIDSRKLLRIAWEKITMQGFLLENIDITVILQIPKINTYIYQMKHHLSQ 119
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_THEFY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermobifida fusca (strain YX) GN=ispF PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21 Identity = 50/120 (41.67%), Postives = 66/120 (55.00%), Query Frame = 1 Query: 319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 VG G D+H + G PL + G+ P E G HSDGDV H DA+ A L D+G F SDP+W+GA + EA + + AGYEIGN+ +I RPK +P + LS +GA Sbjct: 2 VGVGTDVHPFQTGRPLFLAGLEWPDEVGLSGHSDGDVAAHAACDALFSACALGDLGSQFGTSDPRWRGASGVALLTEAAQRVRAAGYEIGNIAIQIIGNRPKFAPRRHEAEKVLSAAVGA 121
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_THEMA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga maritima GN=ispF PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20 Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 1 Query: 310 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 P +G G+D H L G L++ G+ + G HSDGDVL H ++DA+LGA L DIG FP++ ++K A S +KE V++++E G+ + N+DAT++ KLSPY+E I NL L Sbjct: 5 PMFIGFGYDRHPLVEGRRLVLAGVEIDAPLGSLGHSDGDVLSHAIIDALLGAGCLGDIGTWFPET-KEYKDANSLDLLKETVKILEERGFSVVNVDATVVASIVKLSPYREKIVENLKSAL 124 The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bpback to top |