FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis GN=ispF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis GN=ispF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_DESDG (Bifunctional enzyme ispD/ispF OS=Desulfovibrio desulfuricans (strain G20) GN=ispDF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 1
Query:  319 VGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            VG G+D+HR    G P+ +GG+ +    G  AHSDGDVLLH + DA+LG +GL DIG +FPD+D  +  A S+V + E +     AG  I ++D T+I   P+++P+++ I  N+  +   D
Sbjct:  241 VGWGYDVHRFGSDGRPMKLGGVPIAGGPGVIAHSDGDVLLHALTDAVLGCMGLGDIGMLFPDTDAAYDNADSAVMLNEVLEKARNAGLLITHVDLTIITQIPRITPWRDQIHKNICRITRLD 362          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_RHOSR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +E G P  + G+    E GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL++E  +++ N    +I  RPK+ P +   +  LS++LGA
Sbjct:    2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEEDDFDVANAAVQVIGNRPKIGPRRNEAQKVLSDILGA 122          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BLOPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Blochmannia pennsylvanicus (strain BPEN) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 47/117 (40.17%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+G+GFD+H+     PL IGG+++P  +G +AHSDGDV++H ++DA+LGA    DIG +FPD+D K+    S   ++ A   +   G+ + N+D T+IL  PK++ Y   ++ +LS+
Sbjct:    3 RIGYGFDVHQFGGCRPLTIGGVSIPCMKGIKAHSDGDVMMHSLIDALLGAACCGDIGSMFPDTDAKYNNIDSRKLLRIAWEKITMQGFLLENIDITVILQIPKINTYIYQMKHHLSQ 119          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_THEFY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermobifida fusca (strain YX) GN=ispF PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 50/120 (41.67%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            VG G D+H  + G PL + G+  P E G   HSDGDV  H   DA+  A  L D+G  F  SDP+W+GA     + EA + +  AGYEIGN+   +I  RPK +P +      LS  +GA
Sbjct:    2 VGVGTDVHPFQTGRPLFLAGLEWPDEVGLSGHSDGDVAAHAACDALFSACALGDLGSQFGTSDPRWRGASGVALLTEAAQRVRAAGYEIGNIAIQIIGNRPKFAPRRHEAEKVLSAAVGA 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_THEMA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga maritima GN=ispF PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  310 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            P  +G G+D H L  G  L++ G+ +    G   HSDGDVL H ++DA+LGA  L DIG  FP++  ++K A S   +KE V++++E G+ + N+DAT++    KLSPY+E I  NL   L
Sbjct:    5 PMFIGFGYDRHPLVEGRRLVLAGVEIDAPLGSLGHSDGDVLSHAIIDALLGAGCLGDIGTWFPET-KEYKDANSLDLLKETVKILEERGFSVVNVDATVVASIVKLSPYREKIVENLKSAL 124          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_MYCTU3.974e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCTA3.974e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCBT3.974e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCBP3.974e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCBO3.974e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DESDG3.974e-2140.16Bifunctional enzyme ispD/ispF OS=Desulfovibrio des... [more]
ISPF_RHOSR5.190e-2138.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BLOPB5.190e-2140.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THEFY8.853e-2141.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THEMA1.510e-2042.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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