FC875314
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_NOCFA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardia farcinica GN=ispF PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20 Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H +EPG P + G+ E GC HSDGDV H + DA+L A GL D+G +F P+W + + E RL+ EAG+E+ N +I RPK+ P + + L +LL A Sbjct: 2 RVGIGSDVHPIEPGRPCWMAGLLFEGEDGCSGHSDGDVAAHALCDALLSAAGLGDVGAVFGTGRPEWADVSGAAMLTEVRRLLGEAGFEVVNAAVQVIGNRPKIGPRRAEAQRVLGDLLDA 122
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae GN=ispF PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20 Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG GFD+H EPG P + G+ P GC HSDGDV +H + DA+L A G DIG +F DP+W+ + ++ V L+ GYE+ N +I RPK+ P + + LS LL A Sbjct: 6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRA 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae (strain Br4923) GN=ispF PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20 Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG GFD+H EPG P + G+ P GC HSDGDV +H + DA+L A G DIG +F DP+W+ + ++ V L+ GYE+ N +I RPK+ P + + LS LL A Sbjct: 6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRA 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_DESMR (Bifunctional enzyme ispD/ispF OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=ispDF PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20 Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 1 Query: 322 GHGFDLHRL--------EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675 G+G+D+HR +P P+ +GG + AHSDGDVLLH + DA+LG + DIG++FPDS+P + S VF+ EA+ G I ++D T+I PK+SP+ E IR N++ LLG Sbjct: 238 GYGYDVHRYADPRNPGKQPPRPMKLGGFPILGAPEVLAHSDGDVLLHALTDAVLGCVAGGDIGRLFPDSNPDFDNMASGVFLSEALLAAKAKGLTITHVDLTIIAQIPKISPHAEAIRLNVAALLG 363
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ANAMM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anaplasma marginale (strain St. Maries) GN=ispF PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20 Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = 1 Query: 307 LPFRVGHGFDLHRLEPGYP----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 +PFRVG G+D+H P +++ G+ + R +AHSDGDV H +VDA+LG +G IG+ FP++DP+W+ S+ F+ EA GY + N D T++ PK+ P+ ++ +S+LLG D Sbjct: 8 VPFRVGIGYDVHGFADSPPENGHIVLCGVEIAFHRKIKAHSDGDVGTHALVDALLGCVGEGSIGEHFPNTDPRWENMSSTHFLLEAQSKALAKGYAVLNFDLTIVCELPKIIPHVPKMKLFMSKLLGMD 136
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_NOCSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=ispF PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20 Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHE-RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+HRL G PL + G++ P E +G E HSD DV H DA+ A GL D+G F +DP W GA + ++E R + AG+EIGN+ +I RP+L + T LS +GA Sbjct: 6 RVGIGTDVHRLVDGVPLHLAGLHWPDEPQGLEGHSDADVAAHAACDALFSAAGLGDLGSNFGTADPAWAGASGAALLEETARRVRAAGFEIGNVAVQVIGNRPRLGGRRAEAETALSAAVGA 127
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_THENN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=ispF PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20 Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 1 Query: 319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 +G G+D H L G L++ G+ + G HSDGDVL H ++DA+LGA L DIG FP++ ++K A S +KE V++++E G+ + N+DAT++ KLSPY+E I NL L Sbjct: 8 IGFGYDRHPLVEGRRLVLAGVEIDAPLGSLGHSDGDVLSHAIIDALLGAGCLGDIGTWFPET-KEYKDANSLDLLKETVKILEERGFSVVNVDATVVASIVKLSPYREKILENLKSAL 124
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_RHOOB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus opacus (strain B4) GN=ispF PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20 Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H +E G P + G+ E GC HSDGDV +H + DA+L A GL D+G +F P+W G + + E RL+++ + + N +I RPK+ P + + LS++LGA Sbjct: 2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEQDDFGVANAAVQVIGNRPKIGPRRNEAQKVLSDILGA 122
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia canis (strain Jake) GN=ispF PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20 Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 1 Query: 313 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 F+VG G+D+H+ + + I GI + H + AHSDGDV LH + DAILGA+G IGQ FP++D KWK A S F+ EA E GY I N D +I +PK+ P+ ++ ++ L+ D Sbjct: 10 FKVGIGYDVHKFDNIEYDATNTFITICGIKINHHKKIVAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNKWKDAKSDYFLIEAKNKAQEKGYYISNADIIIICEQPKIMPHALKMQEYIANLIKID 138
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=ispF PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20 Identity = 51/130 (39.23%), Postives = 75/130 (57.69%), Query Frame = 1 Query: 313 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684 F+VG G+D+H+ + + I GI + + + AHSDGDV LH + DAILGA+G IGQ FP++D WK S F+ EA + E GY I N D T+I +PK+ P+ ++ ++ L+ DP Sbjct: 10 FKVGIGYDVHKFDNTCYNDANTFITICGIKINYHKKIIAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNTWKNIKSDYFLIEAQKKAQEKGYSISNADITIICEQPKIMPHALEMQEYIANLICIDP 139 The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bpback to top |