FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_NOCFA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardia farcinica GN=ispF PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +EPG P  + G+    E GC  HSDGDV  H + DA+L A GL D+G +F    P+W     +  + E  RL+ EAG+E+ N    +I  RPK+ P +   +  L +LL A
Sbjct:    2 RVGIGSDVHPIEPGRPCWMAGLLFEGEDGCSGHSDGDVAAHALCDALLSAAGLGDVGAVFGTGRPEWADVSGAAMLTEVRRLLGEAGFEVVNAAVQVIGNRPKIGPRRAEAQRVLGDLLDA 122          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae GN=ispF PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG GFD+H  EPG P  + G+  P   GC  HSDGDV +H + DA+L A G  DIG +F   DP+W+    +  ++  V L+   GYE+ N    +I  RPK+ P +   +  LS LL A
Sbjct:    6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae (strain Br4923) GN=ispF PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG GFD+H  EPG P  + G+  P   GC  HSDGDV +H + DA+L A G  DIG +F   DP+W+    +  ++  V L+   GYE+ N    +I  RPK+ P +   +  LS LL A
Sbjct:    6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_DESMR (Bifunctional enzyme ispD/ispF OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  322 GHGFDLHRL--------EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            G+G+D+HR         +P  P+ +GG  +       AHSDGDVLLH + DA+LG +   DIG++FPDS+P +    S VF+ EA+      G  I ++D T+I   PK+SP+ E IR N++ LLG
Sbjct:  238 GYGYDVHRYADPRNPGKQPPRPMKLGGFPILGAPEVLAHSDGDVLLHALTDAVLGCVAGGDIGRLFPDSNPDFDNMASGVFLSEALLAAKAKGLTITHVDLTIIAQIPKISPHAEAIRLNVAALLG 363          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ANAMM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anaplasma marginale (strain St. Maries) GN=ispF PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYP----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +PFRVG G+D+H      P    +++ G+ +   R  +AHSDGDV  H +VDA+LG +G   IG+ FP++DP+W+   S+ F+ EA       GY + N D T++   PK+ P+   ++  +S+LLG D
Sbjct:    8 VPFRVGIGYDVHGFADSPPENGHIVLCGVEIAFHRKIKAHSDGDVGTHALVDALLGCVGEGSIGEHFPNTDPRWENMSSTHFLLEAQSKALAKGYAVLNFDLTIVCELPKIIPHVPKMKLFMSKLLGMD 136          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_NOCSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHE-RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+HRL  G PL + G++ P E +G E HSD DV  H   DA+  A GL D+G  F  +DP W GA  +  ++E  R +  AG+EIGN+   +I  RP+L   +    T LS  +GA
Sbjct:    6 RVGIGTDVHRLVDGVPLHLAGLHWPDEPQGLEGHSDADVAAHAACDALFSAAGLGDLGSNFGTADPAWAGASGAALLEETARRVRAAGFEIGNVAVQVIGNRPRLGGRRAEAETALSAAVGA 127          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_THENN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            +G G+D H L  G  L++ G+ +    G   HSDGDVL H ++DA+LGA  L DIG  FP++  ++K A S   +KE V++++E G+ + N+DAT++    KLSPY+E I  NL   L
Sbjct:    8 IGFGYDRHPLVEGRRLVLAGVEIDAPLGSLGHSDGDVLSHAIIDALLGAGCLGDIGTWFPET-KEYKDANSLDLLKETVKILEERGFSVVNVDATVVASIVKLSPYREKILENLKSAL 124          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_RHOOB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus opacus (strain B4) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +E G P  + G+    E GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL+++  + + N    +I  RPK+ P +   +  LS++LGA
Sbjct:    2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEQDDFGVANAAVQVIGNRPKIGPRRNEAQKVLSDILGA 122          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia canis (strain Jake) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  313 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            F+VG G+D+H+ +          + I GI + H +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A S  F+ EA     E GY I N D  +I  +PK+ P+   ++  ++ L+  D
Sbjct:   10 FKVGIGYDVHKFDNIEYDATNTFITICGIKINHHKKIVAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNKWKDAKSDYFLIEAKNKAQEKGYYISNADIIIICEQPKIMPHALKMQEYIANLIKID 138          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 51/130 (39.23%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  313 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            F+VG G+D+H+ +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D  WK   S  F+ EA +   E GY I N D T+I  +PK+ P+   ++  ++ L+  DP
Sbjct:   10 FKVGIGYDVHKFDNTCYNDANTFITICGIKINYHKKIIAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNTWKNIKSDYFLIEAQKKAQEKGYSISNADITIICEQPKIMPHALEMQEYIANLICIDP 139          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_NOCFA1.510e-2040.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCLE1.510e-2041.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCLB1.510e-2041.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DESMR1.510e-2041.27Bifunctional enzyme ispD/ispF OS=Desulfovibrio mag... [more]
ISPF_ANAMM1.972e-2037.982-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_NOCSJ2.576e-2042.622-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THENN3.364e-2042.372-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RHOOB3.364e-2038.022-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRCJ4.394e-2040.312-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRCR5.738e-2039.232-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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