FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CLAM3 (Bifunctional enzyme ispD/ispF OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ispDF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            R G G D+H ++   PL + G++ P E G   HSDGD + H + DA+L A GL DIG IF   DP+  GA   VF++    L+ +AGY I N+   ++  RPKLSP +      LS  +GA
Sbjct:  258 RSGIGTDVHAVDASQPLWLAGLHWPGEAGLAGHSDGDAVSHAMCDALLSAAGLGDIGGIFGTDDPELDGAHGEVFLRRTAELVRDAGYRIVNVAVQVMAVRPKLSPRRAEAERILSAAVGA 378          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_RHOE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +E G P  + G+      GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL++E  + +GN    +I  RPK+ P +   +  LS++LGA
Sbjct:    2 RVGLGTDVHPIEVGRPCWMAGLLFEEADGCSGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWDGVSGARMLAEVRRLLEENQFTVGNAAVQVIGNRPKIGPRRGEAQKVLSDILGA 122          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium paratuberculosis GN=ispF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P +   +  LSELLGA
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +E G P  + G+    E GCE HSDGDV  H + DA+L A GL D+G +F    P+W G   +  +     L+ + G++IGN    +I  RPK+ P +   +  LS L+GA
Sbjct:    6 RVGIGTDVHPIEEGKPCWLLGLLFSDENGCEGHSDGDVAAHALCDALLSAAGLGDVGAVFGTGRPEWTGVSGAKMLSHVRDLLHDNGFQIGNAAVQVIGNRPKVGPRRAEAQELLSGLIGA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium avium (strain 104) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P +   +  LSELLGA
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGA 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ACIC1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H   P  PL + G++ P E G   HSD DV++H + +A+L A GL D+G  F  ++P+W+ A  +  + E VRL+ +AGY +GN    L+  RPKL   +      L+E +GA
Sbjct:    8 RVGIGVDVHPFSPDRPLWLAGLHWPGEPGLAGHSDADVVIHALCNALLSAAGLGDLGTQFGTAEPEWRDAAGTRLLTETVRLVRDAGYAVGNAAVQLLGERPKLRERRTEAEQLLTETVGA 128          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CORU7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG   D H++EPG P  + G+      GCE HSDGDV+ H +VDA+L A GL D+G        ++ G      I E  +L+ E G+ IGN+ A +I  RPK+ P +E     L+EL+GA
Sbjct:    8 RVGIASDAHQVEPGKPCWMAGLLFEDADGCEGHSDGDVVSHVIVDALLSASGLGDLGSFVGVGRKEYDGVSGERLITECRQLLAENGFTIGNVAAQMIGNRPKMGPRREEAERRLTELVGA 128          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSYCK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Psychrobacter cryohalolentis (strain K5) GN=ispF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 1
Query:  316 RVGHGFDLHRL----EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            ++G G D+H      +    +++ G+ + H     AHSDGDV+LH + DA+LGAL L DIGQ FPD+D    G  S V ++     +  AGY +GN D T++  RPKL+P+   +R N++  L  D
Sbjct:    5 KIGQGIDVHAFHNNGQQQQYVVLAGVPIDHTHSLLAHSDGDVVLHALADALLGALALGDIGQHFPDTDAANAGLDSRVLLRYVYGKVLAAGYILGNADITVMCERPKLAPHNLAMRANIASDLQTD 130          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_HYDS0 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=ispF PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  313 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            +R+G G D H  E G  L +GG       G + HSDGD LLH + DAILGAL   DIG +FPD   + K   S  F+ +A+ +M +  Y I NLD  +I  +P +S  ++ I  +LS LL
Sbjct:    2 YRIGIGQDAHYFEKGKKLYLGGEEFDIGYGLKGHSDGDALLHAITDAILGALAKTDIGTLFPDKSKENKNRNSVDFLNKALEIMYDMDYSIVNLDCNIIADKPNISSVRDKIIESLSRLL 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSYA2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  316 RVGHGFDLHRL----EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            ++G G D+H      +    +++ G+ + H     AHSDGDV+LH + DA+LGAL L DIGQ FPD+D    G  S V ++     +  AGY +GN D T++  RPKL+ +   +R N++  L  D
Sbjct:    5 KIGQGIDVHAFHNNGQQQQYVVLAGVPIEHTHSLLAHSDGDVVLHALADALLGALALGDIGQHFPDTDAANAGLDSRVLLRYVYGKVLAAGYMLGNADITVMCERPKLAVHNLAMRANIASDLQTD 130          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_CLAM37.495e-2041.32Bifunctional enzyme ispD/ispF OS=Clavibacter michi... [more]
ISPF_RHOE49.788e-2038.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCPA9.788e-2038.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCA99.788e-2039.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCA19.788e-2038.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACIC19.788e-2039.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORU71.278e-1941.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSYCK1.670e-1938.892-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HYDS02.848e-1941.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSYA21.413e-1838.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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