FC875314
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CORGL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum GN=ispF PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18 Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + +KE L+ GY IGN+ A L+ PK P +E + +SE++GA Sbjct: 8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQTPKFGPRREEAQQVISEIIGA 128
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + +KE L++ G+ IGN+ A L+ PK P +E + +S+++GA Sbjct: 8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQTPKFGPRREEAQQVISDIIGA 128
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PROAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Propionibacterium acnes GN=ispF PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18 Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 1 Query: 307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 + R G G D+H+L G P+ + G++ P E G HSDGDV H + DA+L A GL DIG IF +DP+W GA + V L+ G+ I N+ ++ RP+++ + L++ +GA Sbjct: 2 IEIRTGIGTDVHQLSAGVPMHVAGLSFPDETVGLVGHSDGDVACHAICDALLSATGLGDIGSIFGTADPQWAGAAGVALLGHVVALVTGEGWTIQNVAVQVVGQRPRMAARRAEAEAALAQTVGA 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PLAFX (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate HB3) GN=ISPF PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17 Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 1 Query: 316 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+G G+D+H+ L+ Y L +GG+ + + +HSDGD++ H +VD+ILGALG DIG +FPD D K K S++F++ A L+ + Y+IGN+D +I PK+S ++ I N+S +L D Sbjct: 65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNID 204
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PLAF7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate 3D7) GN=ISPF PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17 Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 1 Query: 316 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+G G+D+H+ L+ Y L +GG+ + + +HSDGD++ H +VD+ILGALG DIG +FPD D K K S++F++ A L+ + Y+IGN+D +I PK+S ++ I N+S +L D Sbjct: 65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNID 204
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17 Identity = 47/125 (37.60%), Postives = 68/125 (54.40%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690 RVG G D+H G P + + P E G HSDGDV H DA+L A L D+G++F P++ GA +V + E RL+ AG+ IGN+ +I RP+++ +E + +S LGA L Sbjct: 8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVIGNRPRMAGRREDAQKAMSVALGASVSL 132
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_KOSOT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=ispF PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17 Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 313 FRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAG-YEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675 +RVG GFD H LE L +GG+ V E HSDGD L+H +VDAILGA +IG FP+++ +G S+ F+ E +R AG YEI N+D+ +I+ + +++P+ E IR L+ +LG Sbjct: 2 YRVGIGFDAHPLEANKKGLYLGGVKVSEEYSSIGHSDGDALIHAIVDAILGATNAGNIGIWFPENEEN-RGRRSTEFL-EIIRKKILAGKYEILNIDSVIIIDKVRMNPHIENIRLKLARILG 122
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALTO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispF PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17 Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RV G D+H E G P + G++ P + G HSD DV H +A+L A L D+G F P+W GA + E+ R + AGY IGN+ +I RPK+ P + + LS +GA Sbjct: 6 RVAIGVDMHAFESGRPCWVAGLHWPGQDGLAGHSDADVAAHAACNALLSAAELGDLGANFGVGQPEWSGASGVALLSESARRVRTAGYTIGNVSVQVIGNRPKIGPRRAEAQQVLSAAVGA 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_KINRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=ispF PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17 Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H+L G P + G+ E G E HSDGDV H DA+ A GL D+G F + P++ GA + + EA RL+ EAG+EIGN+ ++ RPK+ + + LS GA Sbjct: 6 RVGTGVDVHQLVAGRPCWVAGLLWEGEAAGPEGHSDGDVAAHACCDALFAAAGLGDLGAHFGTARPEFAGASGARLLAEAARLVREAGFEIGNVSVQVVGNRPKVGRRRAEAQAALSRACGA 127
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCVP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=ispF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17 Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678 RVG G D+H +E G P + + GC HSDGDV H + DA+L A G+ DIG++F P+W+G + ++ +M G +GN +I RPK+ P + + LS +LGA Sbjct: 6 RVGLGTDVHPIEAGRPCWLLCLLFDDADGCAGHSDGDVAAHALCDALLSAAGMGDIGEVFGTGLPQWRGVSGADMLRHVHSMMTAEGLRVGNAAVQVIGNRPKIGPRRAEAQRVLSGILGA 126 The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bpback to top |