FC875314
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa GN=ispF PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30 Identity = 58/120 (48.33%), Postives = 88/120 (73.33%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ E G+++GN+DAT++ PK++P+ ET+R ++E LG Sbjct: 2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLG 121
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSEA8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispF PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30 Identity = 58/120 (48.33%), Postives = 88/120 (73.33%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ E G+++GN+DAT++ PK++P+ ET+R ++E LG Sbjct: 2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLG 121
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PORGI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis GN=ispF PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30 Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = 1 Query: 310 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 PFR+G GFD+HRL GYPL +GG+ + H +G E HSD DVL+H + DA+LGA L DIG FP SDP++KG S + + + L+ GYE+GN+DAT+ +PKL+P+ ++ L+E++ Sbjct: 4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARVMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVI 124
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_LARHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispF PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30 Identity = 59/123 (47.97%), Postives = 89/123 (72.36%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684 R+G G+D+HRL G PL++GG+ +P ++G + HSD D L H + DA+ GA L DIG+ FPD+D ++KGA S V ++EAVR + EAG++I N+D+T+I P+L+PY E +R++L+ LG P Sbjct: 4 RIGQGWDVHRLVEGRPLVLGGVTIPFDKGLDGHSDADALCHAITDALFGAAALGDIGRHFPDTDLEFKGADSRVLLREAVRRVREAGFDIVNVDSTVIAQAPRLAPYVEAMRSHLAADLGLSP 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ERWT9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ispF PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30 Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675 R+GHGFD+H PLIIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+D +KGA S ++EA+R + + GY +GN+D T+I PK+ P+ +R N++E LG Sbjct: 2 RIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDEAYKGADSRELLREALRQIAQKGYRVGNVDVTIIAQAPKMLPHAPQMRINIAEDLG 121
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CYAP4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispF PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30 Identity = 58/123 (47.15%), Postives = 83/123 (67.48%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684 R+G+G+D+HRL PLI+GG+N+PHE G HSD DVL H ++DA+LGAL L DIG FP DP+W GA S + + +L+ E G+++GN+D+ ++ RPKL P+ +R LS +L P Sbjct: 5 RIGNGYDIHRLVSDRPLILGGVNIPHELGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPGDPQWAGADSLKLLAQVHQLVQERGWQVGNIDSVIVAERPKLKPHLAAMRDRLSAVLKVKP 127
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CUPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ispF PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30 Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1 Query: 307 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666 +PF RVG G+D+H L PG LI+GG+ +PH+RG HSD D LLH V DA+ GA L DIG+ FPD+D ++ GA S ++EA R + EAGYEIGN+DAT+I PKL+P+ + NL+E Sbjct: 2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRALLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAE 123
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ALKMQ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=ispF PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30 Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675 RVG G+D+HRL G LI+GG+ +PHE+G HSD DVLLH + DA+LGA+ L DIG+ FPD+D K+KG S + E R++ E Y N+DAT+I PK++PY E +R N++E+LG Sbjct: 2 RVGIGYDVHRLVEGRKLIVGGVEIPHEKGLLGHSDADVLLHAIKDALLGAVALGDIGKHFPDTDEKYKGESSLYLLNEVGRMLAEKAYVANNIDATIIAQEPKMAPYIELMRRNIAEVLG 121
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_XYLFA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Xylella fastidiosa GN=ispF PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30 Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 1 Query: 307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684 L R+G G+D+H PG +++GG+ VPH G AHSDGDV+LH + DA+LGALGL DIGQ FP SD +WKGA S VF++ L+ E + +GN+DAT I PK++PY +R ++ LL P Sbjct: 13 LNVRIGQGYDVHAFGPGDHVMLGGVRVPHRCGVLAHSDGDVILHALCDAMLGALGLGDIGQHFPPSDVRWKGADSGVFVRHCHLLLRERDWCVGNVDATAICESPKIAPYVNAMREGIARLLEVQP 138
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_GEOUR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter uraniireducens (strain Rf4) GN=ispF PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30 Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+GHG+D+H+L LI+GG+++P+ERG HSD DVLLH + DAILGA+G DIG+ FPD+DP +KGA S + + L GY IGNLDAT++ RPKL+P+ +R N++ L AD Sbjct: 2 RIGHGYDVHKLVENRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMALAVGKGYAIGNLDATIVAQRPKLAPHIPQMRENIARALKAD 123 The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bpback to top |