FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ACAM1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 57/125 (45.60%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690
            R+G+G+D+H+L  G PLI+GG+ + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DPKW GA S   +++  +L+ + G++IGN+D+ ++  RPKL P+ E +R  +S++L   P L
Sbjct:    5 RIGNGYDIHQLVEGRPLILGGVQIEHSLGLKGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPKWAGADSLKLLEQVHQLILDRGWQIGNIDSVVVAERPKLKPHIEAMRDRISQVLNLSPEL 129          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_NOVAD (Bifunctional enzyme ispD/ispF OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=ispDF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690
            R G GFD+HRL  G  L + G+N+PH +G   HSD DV +H +VDA+LGA+   DIG  FP SDP+WKGA S  F+  A  L+ EAGY I N+D T+I   PK+ P+K  +R  L+ +LG D  L
Sbjct:  231 RTGMGFDVHRLVEGEELWLCGVNIPHGKGLSGHSDADVAIHALVDALLGAIAAGDIGDHFPPSDPQWKGASSDRFLAHAGTLVTEAGYRIANVDVTIICEAPKIGPHKAAMRETLARILGIDSAL 355          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_GEOLS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 59/122 (48.36%), Postives = 86/122 (70.49%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHG+D+HRL     LI+GG+++P E+G   HSD DVLLH + DA+LGAL + DIG+ FPD+DP +KGA S   ++  V L+   GY +GNLDAT+I  RPK++P+ + +R N++   G +
Sbjct:    2 RIGHGYDVHRLVEDRKLIMGGVDIPWEKGLLGHSDADVLLHAIADALLGALAMGDIGKHFPDTDPAFKGADSMKLLEHVVGLIRTQGYAVGNLDATIIAQRPKMAPHIQAMRENVARACGVE 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_SILST (Bifunctional enzyme ispD/ispF OS=Silicibacter sp. (strain TM1040) GN=ispDF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 57/122 (46.72%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+G+G+D+HR  PG  +++ G+ VPHERG + HSD DV +H V DA+ GA+   DIG+ FP SDP+WKGA S +F++ AV L    G+ I N+D TL+   PK+ P+ E +R  ++E++G D
Sbjct:  227 RLGNGYDVHRFGPGDHVMLCGVQVPHERGLQGHSDADVGMHAVTDALYGAMAEGDIGRHFPPSDPQWKGAASDIFLRHAVELARSKGFTINNVDCTLVCEYPKVGPHAEAMRARMAEIMGMD 348          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHESH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sediminis (strain HAW-EB3) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 59/116 (50.86%), Postives = 84/116 (72.41%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLS 663
            R+GHGFD+H+   G PL++GG+++P+E G  AHSDGDV+LH + DA+LGA+ L DIG+ FPD+D ++KGA S   ++   RL  E GY +GNLD T+I   PK++P+ E IR  L+
Sbjct:    4 RIGHGFDVHKFGGGSPLLLGGVHIPYETGLIAHSDGDVVLHAISDAVLGAVALGDIGKHFPDTDEEFKGADSRHLLRHCYRLAKEKGYSMGNLDVTIIAQAPKMAPHIEAIREVLA 119          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+H+     PLI+GG+ VP++ G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY +GNLD T+I   PK+ P+ + IR  LS  L +D
Sbjct:    4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQAPKMLPHIQAIRECLSADLESD 125          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_LISIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Listeria innocua GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 59/123 (47.97%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            R+G G+D+H+L+    LIIGGI +P+E+G   HSD DVLLH + DAI+GA+G  DIG  FPD+D  +K A S+  + E  R ++  G+++GNLDAT+I  +PK++PY E ++  ++ELL A+P
Sbjct:    3 RIGQGYDVHKLDYDRELIIGGIKIPYEKGLLGHSDADVLLHAITDAIIGAIGALDIGHFFPDTDMAYKDADSAELLAEIWRQVEAEGFKLGNLDATIIAEKPKMAPYVELMKRRIAELLHAEP 125          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_DESAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 59/122 (48.36%), Postives = 87/122 (71.31%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            RVG+G+D+HRL  G PL++GG+ +P ++G + HSD DVLLH V DA+LGA GL DIG  FPD DPK+K   S+  ++E  R + + GY+I NLDATL+   PK+ PY++ + + +++ LG +
Sbjct:    2 RVGYGYDVHRLVDGRPLVLGGVTIPFDKGLKGHSDADVLLHAVCDALLGAAGLGDIGMHFPDKDPKYKNIASTRLLEETGRKIAQEGYKIVNLDATLVAEAPKIGPYRQEMVSVIAKCLGLE 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BACSK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 58/122 (47.54%), Postives = 86/122 (70.49%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+G GFD+H+L  G PL++GG+++PH +G   HSD DVLLH + DA LGA+G  D+G+ FPD+D  +K A S   + +A +L+  AGY +GN+D T++  +PKL+PY E +R  ++ELL  D
Sbjct:    3 RIGQGFDVHQLTEGRPLLLGGVHIPHPKGLLGHSDADVLLHTITDAALGAIGAGDLGKHFPDTDEAFKDADSKHLLSQAWQLVKNAGYTLGNVDCTVMAQKPKLAPYIEAMRKQIAELLETD 124          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BACSU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus subtilis GN=ispF PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 62/123 (50.41%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  313 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S   ++    ++ + GY +GN+D T+I  +PK+ PY E +R  ++E L AD
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEAD 124          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_ACAM11.610e-3045.602-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_NOVAD1.610e-3049.60Bifunctional enzyme ispD/ispF OS=Novosphingobium a... [more]
ISPF_GEOLS2.102e-3048.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SILST2.102e-3046.72Bifunctional enzyme ispD/ispF OS=Silicibacter sp. ... [more]
ISPF_SHESH2.746e-3050.862-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHELP2.746e-3050.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LISIN2.746e-3047.972-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_DESAA2.746e-3048.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACSK2.746e-3047.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACSU3.586e-3050.412-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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