FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_YERPN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 63/119 (52.94%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  316 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I   PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_YERPG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 63/119 (52.94%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  316 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I   PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_YERPE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pestis GN=ispF PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 63/119 (52.94%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  316 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I   PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_YERPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 63/119 (52.94%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  316 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I   PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_YERP3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 63/119 (52.94%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  316 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I   PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_XYLFT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            L  R+G G+D+H   P   +++GG+ VPH  G  AHSDGDV+LH + DA+LGALGL DIGQ FP SD +WKGA S VF++    L+ E  + +GN+DAT I   PK++PY   +R  ++ LL   P
Sbjct:   13 LNVRIGQGYDVHAFGPSDHVMLGGVRVPHRCGVLAHSDGDVILHALCDAMLGALGLGDIGQHFPPSDVRWKGADSGVFVRHCNLLLRERDWCVGNVDATAICESPKIAPYVNAMREGIARLLEVQP 138          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSEE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas entomophila (strain L48) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 56/116 (48.28%), Postives = 86/116 (74.14%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLS 663
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S V ++  V ++D  G+++GN+DAT++   PK++P+ ET+R  ++
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRVLLRHVVGIVDNKGWKVGNVDATIVAQAPKMAPHIETMRQQIA 117          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PELPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelobacter propionicus (strain DSM 2379) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            R+GHG+D+H+L  G  LI+GG+++P E+G   HSD DVLLH + DAILGALG  DIG+ FPD+DP +KGA S   ++    L    GY +GNLDAT+I  RPK++P+   +R N++ +L
Sbjct:    2 RIGHGYDVHKLVEGRKLIMGGVDIPWEKGLLGHSDADVLLHAIADAILGALGEGDIGKHFPDTDPAYKGADSLKLLEHVANLAIAKGYCLGNLDATIIAQRPKMAPHIPAMRENIARVL 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_GEOKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  313 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            FR+G GFD+H+L  G PLIIGG+ +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S+  +     L  + GY + N D T+I  +PKL+PY E +R  ++ LL A+
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQKPKLAPYIEEMRAVIARLLEAE 124          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_EDWI9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+HR     PLIIGG+ + H +G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GNLD TLI   PK++P+   +R  L+E
Sbjct:    2 RIGHGFDVHRFGGEGPLIIGGVRIAHPQGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAYKGADSRALLREAYRSIRARGYRLGNLDITLIAQAPKMAPHIPQMRVFLAE 118          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_YERPN7.989e-3052.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERPG7.989e-3052.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERPE7.989e-3052.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERPA7.989e-3052.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERP37.989e-3052.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_XYLFT7.989e-3048.412-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEE47.989e-3048.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PELPD7.989e-3050.422-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOKA7.989e-3049.592-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EDWI97.989e-3052.142-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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