FC875315

Overview
NameFC875315
Unique NameFC875315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.934e-61
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGL+ +KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EAR+EL RML EDELRDAVLLVFAN +
Sbjct:    1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQ 128          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 4.310e-61
Identity = 113/128 (88.28%), Postives = 123/128 (96.09%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG++F+KLF +++ KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRDRVVEAR+EL RMLNEDELRDA+LLVFAN +
Sbjct:    1 MGMAFSKLFDRIWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQ 128          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.811e-59
Identity = 112/128 (87.50%), Postives = 121/128 (94.53%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGLS +KL + LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDR+R+ EAR+EL RML+EDELRDA+LLVFAN +
Sbjct:    1 MGLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQ 128          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.811e-59
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGLS +KLF  LF K+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDR+R+ EA +EL RMLNEDELRDA+LLVFAN +
Sbjct:    1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQ 128          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.365e-59
Identity = 112/124 (90.32%), Postives = 117/124 (94.35%), Query Frame = 1
Query:  355 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRDRVVEAR+EL RMLNEDELRDA+LLVFAN +
Sbjct:    8 FGKLFDGLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQ 131          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 6.880e-59
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGL+F KLFS+ F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE+KNI+FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EA DEL +MLNEDELRDAVLLVF N +
Sbjct:    1 MGLAFGKLFSRFFGKKDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQ 128          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 8.986e-59
Identity = 114/128 (89.06%), Postives = 118/128 (92.19%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG   T L  +LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RMLNEDELRDAVLLVFAN +
Sbjct:    1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQ 128          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.174e-58
Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF N +
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQ 128          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.174e-58
Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF N +
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQ 128          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.174e-58
Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF N +
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQ 128          
The following BLAST results are available for this feature:
BLAST of FC875315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF1_SOLTU1.934e-6192.19ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF_AJECA4.310e-6188.28ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF_CRYNE1.811e-5987.50ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF1_SCHPO1.811e-5986.72ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF_NEUCR2.365e-5990.32ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF1_DICDI6.880e-5986.72ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF_DUGJA8.986e-5989.06ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF2_RAT1.174e-5889.06ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE1.174e-5889.06ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN1.174e-5889.06ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31402F01EF CTVClemen1 Citrus clementina cDNA clone C31402F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875315 ID=FC875315; Name=FC875315; organism=Citrus clementina; type=EST; length=732bp
GAAACAAAGAATGAATGGACAACCAAACAAATATGAATAACTGATCTTAA
CACCGACCGAAGTACCGAACCCTCCTCTCTGACCATCTTTTCGCTGACTC
CGTCAAAATCTCATCAAAAAATTTTTACAATAAAAAAACCCACTTTAAAA
AAAATTGAAAAAAAAAAAGAATCAACAATTAATTTCAAACGTCCTTAATT
TTCGAGACCTATAAAATCTAGAAAAAGCCCGACCATTTTTGTAGTTTTAT
TTTAATTTGAATTTTTGGTTTAAGTGGTGTTCGGCAGCTCCCTCTTGATC
AGATTAGATTACAAATCCTTTATCTTCTTTCTGAGAGCAAAAATGGGGCT
GTCTTTCACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAA
TTCTTATGGTCGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAG
CTTAAGTTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGT
GGAGACTGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAG
GTCAAGACAAGATTCGACCTTTGTGGAGACACTATTTTCAAAATACACAA
GGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTTGAGGC
TAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGATGCTG
TGTTGCTTGTGTTTGCAAACAACAGATCTTCC
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