FC875315

Overview
NameFC875315
Unique NameFC875315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 52/116 (44.83%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  385 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFAN 720
            KKE+ +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY+++ Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FAN
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 130          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL6_BOVIN (ADP-ribosylation factor-like protein 6 OS=Bos taurus GN=ARL6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  385 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFAN 720
            KKE+ +L +GLD +GKTTI+ KLK     +   +PTIGF+++  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FAN
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIQKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFAN 130          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  352 SFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 720
            S    F  LF K+EM + +VGL  +GKTT++  +  G  +  TIPTIGFN++ V   N++  +WD+GGQ + R +W  Y +    ++FVVDS DR++  +++  L  ++N+  L    LLV AN
Sbjct:    6 SIINFFKSLFWKQEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVAN 129          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARD1_CAEEL (Putative GTP-binding protein ard-1 homolog OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  391 EMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            E R++++GLD AGKT+I+ +LK  ++ T +   PTIGFN+ET+ YKN     WDVGG  K+R LW+HY+ N Q + +V+D    +R  EA  EL+R++++  +    ++V  N +
Sbjct:  369 ESRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNYRLNFWDVGGLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSDPLVGTCPVIVAVNRK 483          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 45/121 (37.19%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  367 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    ++++VD+ DR++V  +R+ELH +L++ +L+   +LV  N R
Sbjct:   12 FKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKR 132          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  367 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  N R
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 132          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  367 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  N R
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 132          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  367 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  N R
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 132          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  367 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  N R
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 132          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL8B_BOVIN (ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.691e-20
Identity = 42/121 (34.71%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  367 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + + +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  N R
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 132          
The following BLAST results are available for this feature:
BLAST of FC875315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARL6_MOUSE1.147e-2144.83ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]
ARL6_BOVIN2.556e-2143.97ADP-ribosylation factor-like protein 6 OS=Bos taur... [more]
ARL8_DICDI5.694e-2138.71ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARD1_CAEEL5.694e-2140.87Putative GTP-binding protein ard-1 homolog OS=Caen... [more]
AR8BA_DANRE5.694e-2137.19ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]
ARL8B_RAT1.269e-2035.54ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_MOUSE1.269e-2035.54ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]
ARL8B_HUMAN1.269e-2035.54ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
ARL8B_MACFA1.657e-2035.54ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]
ARL8B_BOVIN3.691e-2034.71ADP-ribosylation factor-like protein 8B OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionC31402F01EF CTVClemen1 Citrus clementina cDNA clone C31402F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875315 ID=FC875315; Name=FC875315; organism=Citrus clementina; type=EST; length=732bp
GAAACAAAGAATGAATGGACAACCAAACAAATATGAATAACTGATCTTAA
CACCGACCGAAGTACCGAACCCTCCTCTCTGACCATCTTTTCGCTGACTC
CGTCAAAATCTCATCAAAAAATTTTTACAATAAAAAAACCCACTTTAAAA
AAAATTGAAAAAAAAAAAGAATCAACAATTAATTTCAAACGTCCTTAATT
TTCGAGACCTATAAAATCTAGAAAAAGCCCGACCATTTTTGTAGTTTTAT
TTTAATTTGAATTTTTGGTTTAAGTGGTGTTCGGCAGCTCCCTCTTGATC
AGATTAGATTACAAATCCTTTATCTTCTTTCTGAGAGCAAAAATGGGGCT
GTCTTTCACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAA
TTCTTATGGTCGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAG
CTTAAGTTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGT
GGAGACTGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAG
GTCAAGACAAGATTCGACCTTTGTGGAGACACTATTTTCAAAATACACAA
GGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTTGAGGC
TAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGATGCTG
TGTTGCTTGTGTTTGCAAACAACAGATCTTCC
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