FC875315

Overview
NameFC875315
Unique NameFC875315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10202 contig Ccv1_Contig10202:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  385 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 720
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L+++ L     L+  N
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGN 129          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 36/113 (31.86%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  388 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            +++ ++MVGLD AGKT     ++        PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  +L    +    +LV AN +
Sbjct:   20 RKVTLVMVGLDNAGKTATAKGIQGEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQ 132          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  313 KSFIFFLRAKMGLSFTKLFS---KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 711
            + ++  ++AK+   + K+F    K    K   IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+ ++    V+L+
Sbjct:    6 QEYLGVVKAKLTEFYEKVFQNFVKSLFGKPSSILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLEKRAPVVVLM 141          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 1
Query:  385 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 678
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  388 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            ++  +L++GLD AGK+T L  L     +   IPT GFN   +  K+    + ++GG   +R  W+ +      L+FVVDS DR R+  AR ELH++L++D   D  ++V AN +
Sbjct:   76 EQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKDP--DLPVVVVANKQ 187          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  385 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            +K  +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++  + +    L+VFAN +
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQ 128          
The following BLAST results are available for this feature:
BLAST of FC875315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
SAR1B_ARATH6.742e-1433.93GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
AR13B_MOUSE6.742e-1431.86ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
SAR1_ENCCU2.169e-1230.88Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
SAR1_TOBAC2.833e-1236.73GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
ARL10_HUMAN6.310e-1235.96ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]
ARL9_HUMAN1.836e-1133.91ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionC31402F01EF CTVClemen1 Citrus clementina cDNA clone C31402F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875315 ID=FC875315; Name=FC875315; organism=Citrus clementina; type=EST; length=732bp
GAAACAAAGAATGAATGGACAACCAAACAAATATGAATAACTGATCTTAA
CACCGACCGAAGTACCGAACCCTCCTCTCTGACCATCTTTTCGCTGACTC
CGTCAAAATCTCATCAAAAAATTTTTACAATAAAAAAACCCACTTTAAAA
AAAATTGAAAAAAAAAAAGAATCAACAATTAATTTCAAACGTCCTTAATT
TTCGAGACCTATAAAATCTAGAAAAAGCCCGACCATTTTTGTAGTTTTAT
TTTAATTTGAATTTTTGGTTTAAGTGGTGTTCGGCAGCTCCCTCTTGATC
AGATTAGATTACAAATCCTTTATCTTCTTTCTGAGAGCAAAAATGGGGCT
GTCTTTCACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAA
TTCTTATGGTCGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAG
CTTAAGTTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGT
GGAGACTGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAG
GTCAAGACAAGATTCGACCTTTGTGGAGACACTATTTTCAAAATACACAA
GGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTTGAGGC
TAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGATGCTG
TGTTGCTTGTGTTTGCAAACAACAGATCTTCC
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