FC875315

Overview
NameFC875315
Unique NameFC875315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10202 contig Ccv1_Contig10202:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 112/128 (87.50%), Postives = 117/128 (91.41%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FAN +
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQ 128
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 112/128 (87.50%), Postives = 117/128 (91.41%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FAN +
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQ 128
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFAN +
Sbjct:    1 MGNVFGSLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQ 128
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.460e-58
Identity = 107/128 (83.59%), Postives = 119/128 (92.97%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG+SF+KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF+NT+G+IFVVDSNDR R+ EAR+ L RMLNEDE+R+AVLLVFAN +
Sbjct:    1 MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQ 128
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.607e-58
Identity = 113/128 (88.28%), Postives = 117/128 (91.41%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG  F  LF  LF K+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFAN +
Sbjct:    1 MGNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQ 128
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57
Identity = 108/128 (84.38%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGL+ + LFS+LF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E  +EL +ML EDELRDAVLL+FAN +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQ 128
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.695e-57
Identity = 108/128 (84.38%), Postives = 119/128 (92.97%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGL+ + +FS++F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ +EL +ML EDELRDAVLLVFAN +
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQ 128
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.695e-57
Identity = 109/128 (85.16%), Postives = 116/128 (90.62%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGL+ + L ++LF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EA  EL  ML EDELRDAVLLVFAN +
Sbjct:    1 MGLTISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQ 128
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57
Identity = 108/128 (84.38%), Postives = 119/128 (92.97%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGL+ +KLF+ L  ++EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR+YFQNTQG+IFVVDSNDRDR+ EAR+EL  MLNEDEL+DAVLLV AN +
Sbjct:    1 MGLTISKLFASLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQ 128
[Close]
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.931e-57
Identity = 112/128 (87.50%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFAN +
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
The following BLAST results are available for this feature:
BLAST of FC875315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF1_LOCMI3.415e-5887.50ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME3.415e-5887.50ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF12_CAEBR3.415e-5889.06ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF_ASHGO4.460e-5883.59ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF12_CAEEL7.607e-5888.28ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF4_BOVIN1.298e-5784.38ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF5_CHICK1.695e-5784.38ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF2_DROME1.695e-5785.16ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF_CANAL2.213e-5784.38ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF3_TAKRU4.931e-5787.50ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402F01EF CTVClemen1 Citrus clementina cDNA clone C31402F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875315 ID=FC875315; Name=FC875315; organism=Citrus clementina; type=EST; length=732bp
GAAACAAAGAATGAATGGACAACCAAACAAATATGAATAACTGATCTTAA
CACCGACCGAAGTACCGAACCCTCCTCTCTGACCATCTTTTCGCTGACTC
CGTCAAAATCTCATCAAAAAATTTTTACAATAAAAAAACCCACTTTAAAA
AAAATTGAAAAAAAAAAAGAATCAACAATTAATTTCAAACGTCCTTAATT
TTCGAGACCTATAAAATCTAGAAAAAGCCCGACCATTTTTGTAGTTTTAT
TTTAATTTGAATTTTTGGTTTAAGTGGTGTTCGGCAGCTCCCTCTTGATC
AGATTAGATTACAAATCCTTTATCTTCTTTCTGAGAGCAAAAATGGGGCT
GTCTTTCACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAA
TTCTTATGGTCGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAG
CTTAAGTTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGT
GGAGACTGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAG
GTCAAGACAAGATTCGACCTTTGTGGAGACACTATTTTCAAAATACACAA
GGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTTGAGGC
TAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGATGCTG
TGTTGCTTGTGTTTGCAAACAACAGATCTTCC
back to top