FC875315

Overview
NameFC875315
Unique NameFC875315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10202 contig Ccv1_Contig10202:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.182e-34
Identity = 69/126 (54.76%), Postives = 92/126 (73.02%), Query Frame = 1
Query:  355 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML--NEDELRDAVLLVFANNR 726
            F  +FS    K+ +RILM+GLD AGK+T+LYKLK G+++ TIPTIGFNVE +EYKN+S  VWD+GGQ+ IR LWR Y Q T   IFVVDS DR+R  E + E+  ++  N++E  +A LL+FAN +
Sbjct:   13 FVNIFSLFEGKRNIRILMIGLDGAGKSTLLYKLKFGDVIRTIPTIGFNVEIIEYKNLSMNVWDIGGQNNIRALWRQYDQRTDVFIFVVDSTDRERFDEVKQEIKNIIEQNKNESSNASLLIFANKQ 138          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.445e-32
Identity = 61/128 (47.66%), Postives = 97/128 (75.78%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG+S +  FS +F  K +++LM+GLD +GKTTILYKL L E+V+TI T+G+NVET+++K+++ T+WD+ G+++IR LW+ ++     +IFVVDS+DR R+ EA  EL +++ E+EL+   LL+FA  +
Sbjct:    1 MGISSSNPFSSIFKSKAIKLLMLGLDGSGKTTILYKLMLNEVVSTISTLGYNVETIQHKHLNLTLWDLAGEERIRTLWKPFYNKCTAIIFVVDSSDRLRIDEAASELAKLMKEEELKGCSLLIFATKQ 128          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 65/128 (50.78%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGL F KL+S LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++LR A +L+FAN +
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ 127          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 65/128 (50.78%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MGL F KL+S LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++LR A +L+FAN +
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ 127          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.725e-31
Identity = 63/128 (49.22%), Postives = 93/128 (72.66%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG+ FT+++ +LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +RP W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FAN +
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 127          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.306e-30
Identity = 62/128 (48.44%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG+ FT+++ +LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FAN +
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 127          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.306e-30
Identity = 62/128 (48.44%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG+ FT+++ +LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FAN +
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 127          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.306e-30
Identity = 62/128 (48.44%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            MG+ FT+++ +LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FAN +
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 127          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.420e-29
Identity = 56/124 (45.16%), Postives = 87/124 (70.16%), Query Frame = 1
Query:  355 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANNR 726
            F  ++++ F   E ++++VGL+AAGKTT LYKL L E+V+T PT+G N+E   Y+NI   +WD+GGQD +R  W  Y+ NTQ +I V+DS DR RV   ++EL +ML  + L+ +++L++AN +
Sbjct:    8 FASIWNRFFNNAEYKVIIVGLNAAGKTTTLYKLLLDEVVSTTPTVGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQ 131          
BLAST of FC875315 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.420e-29
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1
Query:  343 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 603
            MG  F KLF  L  KK+MRIL++ LD AGKTTILYKLKLGE V  +PT+GF VETVEYKN +F VWDVG   KIRPLW+H+FQNT+G
Sbjct:    1 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDVGSHFKIRPLWQHFFQNTKG 87          
The following BLAST results are available for this feature:
BLAST of FC875315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARFF_DICDI1.182e-3454.76ADP-ribosylation factor F OS=Dictyostelium discoid... [more]
ARFD_DICDI1.445e-3247.66ADP-ribosylation factor D OS=Dictyostelium discoid... [more]
ARL5B_MOUSE2.086e-3150.78ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN2.086e-3150.78ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARL5A_MOUSE2.725e-3149.22ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5A_RAT2.306e-3048.44ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_HUMAN2.306e-3048.44ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARL5A_BOVIN2.306e-3048.44ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARL5_DICDI7.420e-2945.16ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]
ARL17_HUMAN7.420e-2968.97ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC31402F01EF CTVClemen1 Citrus clementina cDNA clone C31402F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875315 ID=FC875315; Name=FC875315; organism=Citrus clementina; type=EST; length=732bp
GAAACAAAGAATGAATGGACAACCAAACAAATATGAATAACTGATCTTAA
CACCGACCGAAGTACCGAACCCTCCTCTCTGACCATCTTTTCGCTGACTC
CGTCAAAATCTCATCAAAAAATTTTTACAATAAAAAAACCCACTTTAAAA
AAAATTGAAAAAAAAAAAGAATCAACAATTAATTTCAAACGTCCTTAATT
TTCGAGACCTATAAAATCTAGAAAAAGCCCGACCATTTTTGTAGTTTTAT
TTTAATTTGAATTTTTGGTTTAAGTGGTGTTCGGCAGCTCCCTCTTGATC
AGATTAGATTACAAATCCTTTATCTTCTTTCTGAGAGCAAAAATGGGGCT
GTCTTTCACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAA
TTCTTATGGTCGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAG
CTTAAGTTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGT
GGAGACTGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAG
GTCAAGACAAGATTCGACCTTTGTGGAGACACTATTTTCAAAATACACAA
GGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTTGAGGC
TAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGATGCTG
TGTTGCTTGTGTTTGCAAACAACAGATCTTCC
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