FC875316

Overview
NameFC875316
Unique NameFC875316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 58/173 (33.53%), Postives = 89/173 (51.45%), Query Frame = 3
Query:  111 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 620
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +NR+V   + + F RK ++ + E SAK+    +  F  L  K+   P L   ES
Sbjct:    8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVKMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESES 180          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: YPT53_YEAST (GTP-binding protein YPT53 OS=Saccharomyces cerevisiae GN=YPT53 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 58/168 (34.52%), Postives = 92/168 (54.76%), Query Frame = 3
Query:  111 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-------KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            + K+V++G+   GK++ V R ++ +F++  EPTIG          +   I+F  WDTAGQE+F  L   YY + Q A+++FDVT   ++     W  +L  +V  +I I L GNK+D+       +NR +KA  V     ++NL Y+E SAK+  N  + F  L  K+
Sbjct:   12 TIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTLGEKV 179          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 52/161 (32.30%), Postives = 86/161 (53.42%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ NV  W  ++ R  CEN+  +L GNK D+  ++V +      F     +++ E SAK+  N EK F+ +A ++
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 587
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+   R V+ ++   + + N L + E SAK+  N  + F+ +A+KL
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
The following BLAST results are available for this feature:
BLAST of FC875316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB18_CHICK3.004e-1933.53Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
YPT53_YEAST3.924e-1934.52GTP-binding protein YPT53 OS=Saccharomyces cerevis... [more]
YPT1_PHYIN3.924e-1932.30Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB5C_BOVIN3.924e-1934.78Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB5A_PIG3.924e-1933.54Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE3.924e-1933.54Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA3.924e-1933.54Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN3.924e-1933.54Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA3.924e-1933.54Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN3.924e-1933.54Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]

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Properties
Property NameValue
Genbank descriptionC31402F02EF CTVClemen1 Citrus clementina cDNA clone C31402F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875316 ID=FC875316; Name=FC875316; organism=Citrus clementina; type=EST; length=720bp
GAAACACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAA
AATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGT
TGATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGA
AGACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATAT
GAACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTG
TGGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTG
GTGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATG
TTTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCG
TGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACA
AGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCAC
AGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAA
CTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTA
ACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAAGGTGCAATC
GATTTGGCTGCTCAGCACAACATGAAGCTGAACTTGCTGCTGCTGCTAGT
CAACTCTCCAGATGAGATGA
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