FC875316
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19 Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 3 Query: 93 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 635 +T D+ FK +++G GTGK+ + + + +F++ TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY ++ W D + NI ++LCGNK D+ R+V + + F ++ L + E SA + N E+ FL AR + L+ ++S L P Sbjct: 3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19 Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 3 Query: 93 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 635 +T D+ FK +++G GTGK+ + + + +F++ TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY ++ W D + NI ++LCGNK D+ R+V + + F ++ L + E SA + N E+ FL AR + L+ ++S L P Sbjct: 3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19 Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 3 Query: 93 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 635 +T D+ FK +++G GTGK+ + + + +F++ TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY ++ W D + NI ++LCGNK D+ R+V + + F ++ L + E SA + N E+ FL AR + L+ ++S L P Sbjct: 3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19 Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 3 Query: 93 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 635 +T D+ FK +++G GTGK+ + + + +F++ TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY ++ W D + NI ++LCGNK D+ R+V + + F ++ L + E SA + N E+ FL AR + L+ ++S L P Sbjct: 3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19 Identity = 58/166 (34.94%), Postives = 91/166 (54.82%), Query Frame = 3 Query: 114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEI------SAKSNYNFEKPFLYLARKL 587 FKLV+VGD GKT V+R TG F ++ TIGV+ +++ WDTAGQE+F + YY AI+ +D+T R ++ +VP W D+ + NI +L GNK D+ + ++V+ ++L ++Y+I SAK + N E+ FL +A +L Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS----ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18 Identity = 50/165 (30.30%), Postives = 86/165 (52.12%), Query Frame = 3 Query: 117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 581 K++I+GD G GKT+ + +++ +F K+Y+ TIG + + + K+ WDTAGQE+F L +Y C +++FDV ++ ++ W + +N P ++ GNK+D +RQV K+ K ++ Y+E SAK + N E F + R Sbjct: 10 KVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNKIDENGGSSRQVSEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITR 174
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18 Identity = 52/154 (33.77%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 566 FKLV++GD G GK+ + R EF + + TIGVE + ++ WDTAGQE++ + YY A++++D+T +T++NV W ++L +NI I+L GNK D+++ R V + F ++N + E SA + N E F Sbjct: 15 FKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAF 168
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18 Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = 3 Query: 87 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 566 +Q+ DY +K+V++GD G GK+ + R EF + + TIGVE T I+ WDTAGQE++ + YY A++++D+ + TYK+V W +L + NI I+L GNK D+++ R+V + F K L + E SA + N E F Sbjct: 6 SQEEYDY-LYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAF 167
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18 Identity = 57/168 (33.93%), Postives = 86/168 (51.19%), Query Frame = 3 Query: 111 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT---------------FHRKKNLQYYEISAKSNYNFEKPF 566 S KLV+VGDG GKT + + T EF K Y PT+ + + + +I+ WDTAGQE++ LR Y +I F VT+ ++Y NV T WH ++ +PI+L G K+D +N K++T +R K ++Y E SAK++ N + F Sbjct: 7 SIKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTV-FDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKTSENLKTVF 173
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18 Identity = 57/167 (34.13%), Postives = 87/167 (52.10%), Query Frame = 3 Query: 75 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 566 MA + DY FK+V++GD G GK+ + R EF + + TIGVE ++ WDTAGQE++ + YY A++++DVT T++NV W ++L NI I+L GNK D+K+ + A + ++ K+ L + E SA N EK F Sbjct: 1 MARRPDEEYDY-LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAF 166 The following BLAST results are available for this feature:
BLAST of FC875316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875316 ID=FC875316; Name=FC875316; organism=Citrus clementina; type=EST; length=720bpback to top |