FC875316
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18 Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 3 Query: 114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587 FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE F + YY A++++D+T R T+ ++ TW D + N+ I+L GNK D+++R+ K+ F R+ L + E SAK+ N E+ F+ A+++ Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18 Identity = 55/185 (29.73%), Postives = 95/185 (51.35%), Query Frame = 3 Query: 114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA---RKLAG--DPNLHFVESPALAPPEG 644 FKL+++GD G GK+ + R + + Y TIGV+ + I+ WDTAGQE+F + YY I+++DVT +++ NV W +++ R C+++ +L GNK D+ +++ + + + E SAKS+ N E+ F+ +A +KL G PN + + + P G Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTG 193
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18 Identity = 55/162 (33.95%), Postives = 83/162 (51.23%), Query Frame = 3 Query: 117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 560 KL+ +GD G GKTTF+ R+ +F K+ T+G++ N K+ WDTAGQE+F L ++ ++MFD+T++ ++ NV W L CEN IVL GNK D+ + R+V +Q K ++ Y+E SA + N EK Sbjct: 11 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVAYNTQGPNGPTGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARDLAEKYSIPYFETSAATGQNVEK 172
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18 Identity = 50/165 (30.30%), Postives = 84/165 (50.91%), Query Frame = 3 Query: 117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 581 K++I+GD G GKT+ + +++ +F +Y+ TIG + + WDTAGQE+F L +Y C ++++DV + ++ N+ W + EN P V+ GNK+D+ +R V K+ K N+ Y+E SAK N E+ F +A+ Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAK 174
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18 Identity = 50/161 (31.06%), Postives = 86/161 (53.42%), Query Frame = 3 Query: 114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587 FKL+++GD G GKT + R F Y TIG++ +I+ WDTAGQE+F + YY I+++D+T +++N+ W + + + +L GNK D++ R+V+ +Q R+ ++++E SAKS+ N ++ F LAR + Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18 Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 3 Query: 114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV--KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587 FKL+++GD G GKT + R F Y TIG++ +I+ WDTAGQE+F + YY I+++D+T +++N+ W + + + +L GNK D+ K + +K + R+ ++++E SAKS+ N ++ F LAR + Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4) HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18 Identity = 55/162 (33.95%), Postives = 82/162 (50.62%), Query Frame = 3 Query: 117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 560 KL+ +GD G GKTTF+ R+ +F K+ T+G++ N K+ WDTAGQE+F L ++ ++MFD+T++ ++ NV W L CEN IVL GNK D+ + R+V +Q K + Y+E SA + N EK Sbjct: 11 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 172
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18 Identity = 52/163 (31.90%), Postives = 87/163 (53.37%), Query Frame = 3 Query: 114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 593 +KLV +GD GKT+ + R + F+ Y+ TIG++ + +R WDTAGQE+F L Y AI+++D+T ++++ N W D+ N+ I+L GNK D+ + RQV ++ K+ ++ + E SAK+ +N + F +A L G Sbjct: 7 YKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPG 169
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18 Identity = 54/161 (33.54%), Postives = 90/161 (55.90%), Query Frame = 3 Query: 114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587 FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE F + YY A++++D+T R T+ ++ TW D + N+ I+L GNK D++ R+VK ++ F R+ L + E SAK+ N E+ F+ A+++ Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEI 167
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18 Identity = 53/182 (29.12%), Postives = 101/182 (55.49%), Query Frame = 3 Query: 117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR----KLAGDPNLHFVESPALAP 635 KL+IVG G GKT+ + +++ F ++Y+ T+G + + ++ WDT GQE+F + +Y I+ FDVT +++ + W D L ++ ++ P+V+ GNK+D+++R+V + V + ++K++ Y+E+SAK++ N + F LA + G H ++S L+P Sbjct: 10 KLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLEDRKVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKLSP 191 The following BLAST results are available for this feature:
BLAST of FC875316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875316 ID=FC875316; Name=FC875316; organism=Citrus clementina; type=EST; length=720bpback to top |