FC875316

Overview
NameFC875316
Unique NameFC875316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ TW  D  +    N+ I+L GNK D+++R+   K+    F R+  L + E SAK+  N E+ F+  A+++
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 55/185 (29.73%), Postives = 95/185 (51.35%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA---RKLAG--DPNLHFVESPALAPPEG 644
            FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT  +++ NV  W +++ R  C+++  +L GNK D+  +++        +     + + E SAKS+ N E+ F+ +A   +KL G   PN +   +  +  P G
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTG 193          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 55/162 (33.95%), Postives = 83/162 (51.23%), Query Frame = 3
Query:  117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 560
            KL+ +GD G GKTTF+ R+   +F  K+  T+G++        N            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K ++ Y+E SA +  N EK
Sbjct:   11 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVAYNTQGPNGPTGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARDLAEKYSIPYFETSAATGQNVEK 172          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 50/165 (30.30%), Postives = 84/165 (50.91%), Query Frame = 3
Query:  117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 581
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +          EN P V+ GNK+D+    +R V  K+       K N+ Y+E SAK   N E+ F  +A+
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAK 174          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 50/161 (31.06%), Postives = 86/161 (53.42%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKL+++GD G GKT  + R     F   Y  TIG++           +I+   WDTAGQE+F  +   YY      I+++D+T   +++N+  W + +       +  +L GNK D++  R+V+ +Q     R+  ++++E SAKS+ N ++ F  LAR +
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV--KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKL+++GD G GKT  + R     F   Y  TIG++           +I+   WDTAGQE+F  +   YY      I+++D+T   +++N+  W + +       +  +L GNK D+  K + +K +     R+  ++++E SAKS+ N ++ F  LAR +
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 55/162 (33.95%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 560
            KL+ +GD G GKTTF+ R+   +F  K+  T+G++        N            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct:   11 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 172          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 52/163 (31.90%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 593
            +KLV +GD   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y      AI+++D+T ++++ N   W  D+      N+ I+L GNK D+ + RQV  ++     K+ ++ + E SAK+ +N +  F  +A  L G
Sbjct:    7 YKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPG 169          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 54/161 (33.54%), Postives = 90/161 (55.90%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ TW  D  +    N+ I+L GNK D++  R+VK ++   F R+  L + E SAK+  N E+ F+  A+++
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEI 167          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 53/182 (29.12%), Postives = 101/182 (55.49%), Query Frame = 3
Query:  117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR----KLAGDPNLHFVESPALAP 635
            KL+IVG  G GKT+ + +++   F ++Y+ T+G  +       +   ++   WDT GQE+F  +   +Y      I+ FDVT   +++ +  W  D L ++    ++ P+V+ GNK+D+++R+V  + V  + ++K++ Y+E+SAK++ N  + F  LA     +  G    H ++S  L+P
Sbjct:   10 KLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLEDRKVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKLSP 191          
The following BLAST results are available for this feature:
BLAST of FC875316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_CANFA4.338e-1832.92Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB1B_DICDI4.338e-1829.73Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RB27B_BOVIN5.666e-1833.95Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]
RAB7_PEA5.666e-1830.30Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=... [more]
RAB13_RAT5.666e-1831.06Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_MESAU5.666e-1830.43Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RB27B_HUMAN7.400e-1833.95Ras-related protein Rab-27B OS=Homo sapiens GN=RAB... [more]
RAB6_DICDI7.400e-1831.90Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]
RAB2_LYMST7.400e-1833.54Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB7B_MOUSE9.665e-1829.12Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402F02EF CTVClemen1 Citrus clementina cDNA clone C31402F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875316 ID=FC875316; Name=FC875316; organism=Citrus clementina; type=EST; length=720bp
GAAACACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAA
AATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGT
TGATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGA
AGACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATAT
GAACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTG
TGGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTG
GTGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATG
TTTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCG
TGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACA
AGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCAC
AGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAA
CTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTA
ACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAAGGTGCAATC
GATTTGGCTGCTCAGCACAACATGAAGCTGAACTTGCTGCTGCTGCTAGT
CAACTCTCCAGATGAGATGA
back to top