FC875316

Overview
NameFC875316
Unique NameFC875316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875316_ssr685 microsatellite FC875316_ssr685:685..696. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.197e-84
Identity = 146/181 (80.66%), Postives = 162/181 (89.50%), Query Frame = 3
Query:  111 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEGAID 653
            +FKLV+VGDGGTGKTTFVKRH TGEF  +Y  T+GVEVHPL+F T+CG IRF  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P+L FV +PAL P E AID
Sbjct:    7 AFKLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPSLEFVATPALRPAETAID 187          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.121e-82
Identity = 146/187 (78.07%), Postives = 163/187 (87.17%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEGAID--LAAQH 668
            FKLV+VGDGGTGKTTF+KRHLTGEFEK+Y  T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP+WH+DL RVCENIPIVLCGNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV  PALAPPE  +D  LAAQ+
Sbjct:   11 FKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQY 197          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.261e-82
Identity = 141/183 (77.05%), Postives = 161/183 (87.98%), Query Frame = 3
Query:   75 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 623
            MALPNQQ VD P+FKL+IVGDGGTGKTTF+KRHLTGEFE   EPT+GV+++PLDFFTN GKIRF CWDTAGQEK+ GL+D YYIHGQCAIIMFDVTAR TY N+  W+RDL RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD  L FVESP
Sbjct:    1 MALPNQQNVDLPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVESP 183          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.258e-82
Identity = 145/187 (77.54%), Postives = 163/187 (87.17%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEGAID--LAAQH 668
            FK+V+VGDGGTGKTTF+KRHLTGEFEK+Y  T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP+WH+DL RVCENIPIVLCGNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV  PALAPPE  +D  LAAQ+
Sbjct:   11 FKVVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQY 197          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.492e-76
Identity = 134/183 (73.22%), Postives = 156/183 (85.25%), Query Frame = 3
Query:  108 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEGAIDL 656
            P +KL++VGDGG GKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN GK +F  WDTAGQEKFGGLRDGYYI   CAIIMFDV++R+TYKNVP W+RD+ RVCE IP+VL GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+  PNL FV   A A PE  IDL
Sbjct:    8 PQYKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIMFDVSSRITYKNVPNWYRDITRVCETIPMVLVGNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQIDL 189          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.281e-74
Identity = 127/179 (70.95%), Postives = 147/179 (82.12%), Query Frame = 3
Query:  117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEGAID 653
            KLV+VGDGG GKTTFV+RHLTGEFE +Y PT+GV VHPL F+TN GKI F  WDTAGQEKFGGLRDGYYI G CAIIMFDVT+R++YKNVP WH DL RVCENIPIVLCGNKVDVK+R+VK  Q+ FHR+ NL YY++SAKSNYNFEKPF++L  KL G+  +  V+ P L  PE  +D
Sbjct:    8 KLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETVLD 186          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.330e-67
Identity = 121/185 (65.41%), Postives = 146/185 (78.92%), Query Frame = 3
Query:   87 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 641
            N+Q V    FKLV+VGDGG GKTTFV RH TGEFEK+Y  T GV V  +  +T  G IRF  WDTAGQEK GGLR+GYYI    AI+MFDVT+R+TYKN+P WH+DL R+CENIPIVL GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE  AL  P+
Sbjct:    4 NKQNV-VAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDLTRICENIPIVLVGNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPD 187          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 121/183 (66.12%), Postives = 145/183 (79.23%), Query Frame = 3
Query:   87 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 635
            N+Q V    FKLV+VGDGG GKTTFV RH TGEFEK+Y  T GV V  +   T  G IRF  WDTAGQEK GGLR+GYYI    AI+MFDVT+R+TYKN+P WH+DL R+CEN+PIVL GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE  ALAP
Sbjct:    4 NKQDV-VAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTRICENVPIVLVGNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAP 185          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.390e-63
Identity = 112/176 (63.64%), Postives = 135/176 (76.70%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 641
            FKL+++GDGGTGKTT VKRHLTGEF+ +Y  T+GVEV  L F TN G  R   WDTAGQE++GGLRDGY++  QCAIIMFDV +  TY NV  WHRDL RVC NIPIV+CGNKVD+ +++   K V F RK N+   E+SAKSNYN EKPF+YL RKL GDP+L  V+SPA+ PP+
Sbjct:   11 FKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVRVCGNIPIVICGNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPK 186          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.023e-51
Identity = 103/220 (46.82%), Postives = 138/220 (62.73%), Query Frame = 3
Query:  111 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-----------IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEGAIDLAAQHNM-KXXXXXXXVNSPDE 716
            SFK+++VGDG TGKTTFV RH+TGEF K+Y  TIGVE+  L F+       N  ++     DTAGQEKFGGLRDGYY+     ++ FDVT R+TYKNV +W+RD+ R+C             + IVL GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L  DP + F ++PAL P +  +D A +  + K       V  PD+
Sbjct:    6 SFKVILVGDGATGKTTFVTRHITGEFRKQYISTIGVEIRQLPFYVAGQSCPNGREVLLNVHDTAGQEKFGGLRDGYYVDSDACLLFFDVTNRVTYKNVESWYRDVFRICPTRRDASTGEEKPLAIVLVGNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDD 225          
The following BLAST results are available for this feature:
BLAST of FC875316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_YARLI1.197e-8480.66GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RANT_RAT1.121e-8278.07GTP-binding nuclear protein Ran, testis-specific i... [more]
RAN4_ARATH3.261e-8277.05GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RANT_MOUSE4.258e-8277.54GTP-binding nuclear protein Ran, testis-specific i... [more]
RAN_PLAFA3.492e-7673.22GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RAN_DICDI7.281e-7470.95GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAN_TETTH1.330e-6765.41GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAN_TETPY2.963e-6766.12GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RANL_DROME3.390e-6363.64GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_GIALA1.023e-5146.82GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]

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Properties
Property NameValue
Genbank descriptionC31402F02EF CTVClemen1 Citrus clementina cDNA clone C31402F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875316 ID=FC875316; Name=FC875316; organism=Citrus clementina; type=EST; length=720bp
GAAACACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAA
AATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGT
TGATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGA
AGACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATAT
GAACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTG
TGGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTG
GTGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATG
TTTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCG
TGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACA
AGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCAC
AGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAA
CTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTA
ACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAAGGTGCAATC
GATTTGGCTGCTCAGCACAACATGAAGCTGAACTTGCTGCTGCTGCTAGT
CAACTCTCCAGATGAGATGA
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