FC875316

Overview
NameFC875316
Unique NameFC875316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875316_ssr685 microsatellite FC875316_ssr685:685..696. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 59/187 (31.55%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEGAIDLAAQ 665
            FK+V++GD G GK+  + R    EF  + + TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I++ GNK D+K+ +  +++       K+ L + E SA    N EK F  +  ++      H +   ALA  E + +L  Q
Sbjct:   13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEI-----YHIISKKALAAQEASSNLPGQ 194          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 61/172 (35.47%), Postives = 92/172 (53.49%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYN----FEKPFLYLARKLAGDPNL 605
            FK ++VGD   GK+  + + +   F    + TIGVE        N  +I+   WDTAGQEKF  +   YY    CA+I++D+T R +++++ +W  D CR     ++  VL GNK D++ NRQV   +   F  K  L ++E SAK+  N    FEK    + +KL  +P L
Sbjct:   25 FKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTD-CRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGL 195          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 62/197 (31.47%), Postives = 104/197 (52.79%), Query Frame = 3
Query:   93 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLH-FVESPALAPPEGAIDLAAQH 668
            + VDY  FK++++GD   GKT  V+   +G + +  + TIGV+        +  K++   WDTAGQE+F  +   YY     AII +D+T R T+++VP W  ++ +    N+ I+L GNK D+ + R V  +      +K   L   E SAK + N ++ F+ +A++L    +LH + ES     P+ +  +   H
Sbjct:   12 ENVDY-LFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKELIARNSLHLYGESAQQGLPQDSSPVLVAH 207          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 57/176 (32.39%), Postives = 94/176 (53.41%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 629
            FK++++GD   GKT  V+   +G + +  + TIGV+        +  K++   WDTAGQE+F  +   YY     AII +D+T R T++++P W  ++ +    N+ I+L GNK D+ + R V  +      +K   L   E SAK + N E+ F+ +A++L    +LH     AL
Sbjct:   18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLYGESAL 193          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 53/161 (32.92%), Postives = 91/161 (56.52%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 587
            FKL+++GD G GKT  + R     F   +  TIG++        +  KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+++++V  K+K     R+  ++++E SAK+N N EK FL LA  +
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 60/185 (32.43%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEGAIDLA 659
            FK+V++GD G GK+  + R    EF  + + TIGVE            ++   WDTAGQE++  +   YY     A++ +D+T R T+ NV  W R+L      NI I+L GNK D+K+ +  ++Q      +K+ L + E SA    N +K F  +   +      H +   ALA  E A   A
Sbjct:   13 FKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDI-----YHIISKKALAAQEAAASTA 192          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 52/188 (27.66%), Postives = 96/188 (51.06%), Query Frame = 3
Query:  117 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG---DPNLHFVESPALAPPE 641
            K++++GD G GKT+ + +++  +F ++Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++ +DV    ++  +  WH +  +        + P +L GNK+D+    +R V  K+       K N+ Y+E SAK ++N +  FL +A+       + +++F   P  A PE
Sbjct:   10 KVIVLGDTGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPE 197          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 62/180 (34.44%), Postives = 95/180 (52.78%), Query Frame = 3
Query:   63 TNQLMALPN--QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 587
            T++  A PN   Q      FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+   R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct:    2 TSRGAARPNGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 57/165 (34.55%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 599
            +K++++GD   GKT+ VKR     F++    TIGVE    +   +  K+    WDTAGQEKF  L   YY      I+ +DVT R ++ N+  W  ++       N+  +L GNK+D +NR+V  ++   F +KK + + E SAKS    ++ F  LA+K+   P
Sbjct:    7 YKVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKIDKENREVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIP 171          
BLAST of FC875316 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 53/153 (34.64%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  114 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 566
            FKL+I+GD G GK++ + R     F   Y  TIGV+        N  K++   WDTAGQE+F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+V   +    F  +  +Q +E SAK N N E+ F
Sbjct:    9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161          
The following BLAST results are available for this feature:
BLAST of FC875316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB2BV_BETVU3.549e-2031.55Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB2B_DICDI3.549e-2035.47Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB19_RAT3.549e-2031.47Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB19_HUMAN4.635e-2032.39Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB10_DISOM7.906e-2032.92Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RB11A_TOBAC1.033e-1932.43Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB7_VIGAC1.033e-1927.66Ras-related protein Rab7 OS=Vigna aconitifolia PE=... [more]
RAB5B_CHICK1.033e-1934.44Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB18_DICDI1.033e-1934.55Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RAB35_RAT1.349e-1934.64Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC31402F02EF CTVClemen1 Citrus clementina cDNA clone C31402F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875316 ID=FC875316; Name=FC875316; organism=Citrus clementina; type=EST; length=720bp
GAAACACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAA
AATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGT
TGATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGA
AGACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATAT
GAACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTG
TGGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTG
GTGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATG
TTTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCG
TGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACA
AGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCAC
AGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAA
CTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTA
ACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAAGGTGCAATC
GATTTGGCTGCTCAGCACAACATGAAGCTGAACTTGCTGCTGCTGCTAGT
CAACTCTCCAGATGAGATGA
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