FC875317

Overview
NameFC875317
Unique NameFC875317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9909 contig Ccv1_Contig9909:8..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK_LITCN (S-adenosylmethionine synthetase OS=Litchi chinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 6.472e-107
Identity = 185/202 (91.58%), Postives = 193/202 (95.54%), Query Frame = 3 
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            METFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDP+SKVACETCT+TNMVMVFGEITTKA VDYE+IVRDTCRSIGF SDDVGLDAD+CKVLVNIEQQSPDIAQGVHGH TK+PE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC+WLRPDGKTQVTVEYYN  GAMVPVRVHTVLISTQHDETVT
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTRTNMVMVFGEITTKANVDYEQIVRDTCRSIGFTSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNGNGAMVPVRVHTVLISTQHDETVT 202
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 6.472e-107
Identity = 185/203 (91.13%), Postives = 194/203 (95.57%), Query Frame = 3 
Query:   93 KMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            +++TFLFTSESVNEGHPDKLCDQISDAVLDACL +DPESKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR IGFVS+DVGLDA+HCKVLVNIEQQSPDIAQGVHGHFTKRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN  C+WLRPDGKTQVTVEY ND GAMVP+RVHTVLISTQHDETVT
Sbjct:    3 EVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLISTQHDETVT 205
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK_POPDE (S-adenosylmethionine synthetase OS=Populus deltoides GN=METK PE=2 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 8.453e-107
Identity = 186/201 (92.54%), Postives = 193/201 (96.02%), Query Frame = 3 
Query:   99 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            ETFLFTSESVNEGHPDKLCDQISDAVLDACL QDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHF+KRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC+WLRPDGKTQVTVEYYN+ GAMVPVRVHTVLISTQHDETVT
Sbjct:    3 ETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRNIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFSKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVT 203
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 8.453e-107
Identity = 186/201 (92.54%), Postives = 193/201 (96.02%), Query Frame = 3 
Query:   99 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            ETFLFTSESVNEGHPDKLCDQISDAVLDACL QDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHF+KRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC+WLRPDGKTQVTVEYYN+ GAMVPVRVHTVLISTQHDETVT
Sbjct:    3 ETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRNIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFSKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVT 203
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK_SOLBR (S-adenosylmethionine synthetase OS=Solanum brevidens GN=SAMS PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.104e-106
Identity = 186/202 (92.08%), Postives = 193/202 (95.54%), Query Frame = 3 
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTN+VMVFGEITTKA VDYEKIVRDTCR+IGFVSDDVGLDAD+CKVLV IEQQSPDIAQGVHGH TKRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC WL+PDGKTQVTVEY ND GAM+P+RVHTVLISTQHDETVT
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCRWLKPDGKTQVTVEYCNDNGAMIPIRVHTVLISTQHDETVT 202
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.104e-106
Identity = 183/201 (91.04%), Postives = 194/201 (96.52%), Query Frame = 3 
Query:   99 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            ETFL+TSESVNEGHPDKLCDQISDAVLDACLEQDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVR+TCR+IGFVSDDVGLDAD+CKVLVNIEQQSPDIAQGVHGH TKRPE+IGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVT+EY+ND GAMVP+RVHTVLISTQHDETVT
Sbjct:    4 ETFLYTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRNTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYFNDKGAMVPIRVHTVLISTQHDETVT 204
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.104e-106
Identity = 185/202 (91.58%), Postives = 191/202 (94.55%), Query Frame = 3 
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            METFLFTSESVNEGHPDKLCDQ+SDA+LDACLEQDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVR TCRSIGFVSDDVGLDAD C VLVNIEQQSPDIAQGVHGH TKRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEY N+ GAMVP+RVHTVLISTQHDETVT
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRSTCRSIGFVSDDVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYLNENGAMVPIRVHTVLISTQHDETVT 202
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.104e-106
Identity = 186/202 (92.08%), Postives = 193/202 (95.54%), Query Frame = 3 
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTN+VMVFGEITTKA VDYEKIVRDTCR+IGFVSDDVGLDAD+CKVLV IEQQSPDIAQGVHGH TKRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEY ND GAM+P++VHTVLISTQHDETVT
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYCNDNGAMIPIKVHTVLISTQHDETVT 202
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.883e-106
Identity = 185/202 (91.58%), Postives = 191/202 (94.55%), Query Frame = 3 
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            METFLFTSESVNEGHPDKLCDQISDAVLDACL QDPESKVACETC+KTNMVMVFGEITTKA VDYEKIVRDTCR IGF SDDVGLDAD+CK LVNIEQQSPDIAQGVHGH +KRPE+IGAGDQGHMFGYATDET E MPL+HVLAT+LGARLTEVRKN TC WLRPDGKTQVTVEYYND GAMVPVRVHTVLISTQHDETVT
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCSKTNMVMVFGEITTKADVDYEKIVRDTCRGIGFTSDDVGLDADNCKALVNIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATRLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDKGAMVPVRVHTVLISTQHDETVT 202
[Close]
BLAST of FC875317 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.459e-106
Identity = 184/202 (91.09%), Postives = 192/202 (95.05%), Query Frame = 3 
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLISTQHDETVT 701
            METFLFTSESVNEGHPDKLCDQ+SDA+LDACLEQDPESKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR IGFVS DVGLDAD+CKVLVNIEQQSPDIAQGVHGH TK+PE+IGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVTVEY ND GAMVP+RVHTVLISTQHDETVT
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDETVT 202
The following BLAST results are available for this feature:
BLAST of FC875317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LITCN6.472e-10791.58S-adenosylmethionine synthetase OS=Litchi chinensi... [more]
METK3_ORYSJ6.472e-10791.13S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK_POPDE8.453e-10792.54S-adenosylmethionine synthetase OS=Populus deltoid... [more]
METK3_POPTR8.453e-10792.54S-adenosylmethionine synthetase 3 OS=Populus trich... [more]
METK_SOLBR1.104e-10692.08S-adenosylmethionine synthetase OS=Solanum brevide... [more]
METK_MEDFA1.104e-10691.04S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK2_POPTR1.104e-10691.58S-adenosylmethionine synthetase 2 OS=Populus trich... [more]
METK1_SOLTU1.104e-10692.08S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK_GOSHI1.883e-10691.58S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK3_SOLLC2.459e-10691.09S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]

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Properties
Property NameValue
Genbank descriptionC31402F03EF CTVClemen1 Citrus clementina cDNA clone C31402F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875317 ID=FC875317; Name=FC875317; organism=Citrus clementina; type=EST; length=718bp
CAAACTCAATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGA
ATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGA
GACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGT
TGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGAT
CCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCAT
GGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTG
TTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTT
GACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGA
TATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTG
GTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCT
GAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCT
CACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGA
AGACCCAGGTCACTGTTGAGTACTACAACGACNATGGTGCCATGGTCCCA
GTCCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGACTGTCAC
AATGATGAATTGCTGCTG
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