FC875321

Overview
NameFC875321
Unique NameFC875321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10205 contig Ccv1_Contig10205:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.137e-27
Identity = 49/88 (55.68%), Postives = 74/88 (84.09%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            VTDS+++  V+ S+ PVLV+FWAPWCGPCRM+AP ++E+A++Y GK+   K+NTD++P +A++YGIRSIPT++ FK G+K + ++GAV
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAV 94          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.137e-27
Identity = 49/88 (55.68%), Postives = 74/88 (84.09%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            VTDS+++  V+ S+ PVLV+FWAPWCGPCRM+AP ++E+A++Y GK+   K+NTD++P +A++YGIRSIPT++ FK G+K + ++GAV
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAV 94          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.940e-27
Identity = 50/88 (56.82%), Postives = 74/88 (84.09%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            V+D+S++  V+ SE PVLV+FWAPWCGPCRM+AP ++E++++Y GKV   KLNTD++PN A++YGIRSIPT++ FK G++ + ++GAV
Sbjct:    7 VSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAV 94          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.322e-27
Identity = 51/91 (56.04%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            V  VTD+S++  VI++  PVLV+FWAPWCGPCRM++P ++E+A+EY   +   K+NTDD+P IA +YGIRSIPT++ FK GE+ +++IGAV
Sbjct:    3 VSQVTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAV 93          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.644e-27
Identity = 50/91 (54.95%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            V  VTD+S++  VI+++ PVLV+FWAPWCGPCRM++P ++ +A+EY   +   K+NTDD+P IA +YGIRSIPT++ FK+GE+ +++IGAV
Sbjct:    3 VSQVTDASFKQEVINNDLPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAV 93          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.628e-27
Identity = 52/88 (59.09%), Postives = 74/88 (84.09%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            VTD S+E  V++SE  VLV+FWAPWCGPCRMI+P I+ELA+EY  +V   K+NTD++P+I+ +YGIRSIPT++ FK+G++ +++IGAV
Sbjct:    7 VTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAV 94          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.801e-26
Identity = 46/88 (52.27%), Postives = 76/88 (86.36%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            VTD++++  V+ S  PVLV+FWAPWCGPCRM+AP ++E+A++Y+ +V   K+NTD++P++A++YGIRSIPT++ FK+G++ ++++GAV
Sbjct:    7 VTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAV 94          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.778e-26
Identity = 52/91 (57.14%), Postives = 70/91 (76.92%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            +  V D+S+   VI+S  PVLV+FWAPWCGPCRMIA  I+E+A +Y  K+   K+NTD +P IAT+YGIRSIPTV+ F NG+K ++++GAV
Sbjct:    3 ISQVIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAV 93          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_RICFE (Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.241e-26
Identity = 50/86 (58.14%), Postives = 70/86 (81.40%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VTDSS++  V+ S+ PVLV+FWA WCGPC+M+ P I+E++KE  GKV   K+N D++PNI ++YGIRSIPT++ FKNGE+K++ IG
Sbjct:    5 VTDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNIPSEYGIRSIPTIMLFKNGEQKDTKIG 90          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_RICCN (Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.177e-24
Identity = 48/86 (55.81%), Postives = 68/86 (79.07%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            V DSS++  V+ S+ PVLV+FWA WCGPC+M+ P I+E++KE  GKV   K+N D++PN  ++YGIRSIPT++ FKNGE+K++ IG
Sbjct:    5 VMDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELQGKVKVLKMNIDENPNTPSEYGIRSIPTIMLFKNGEQKDTKIG 90          
The following BLAST results are available for this feature:
BLAST of FC875321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THIO1_ANASP1.137e-2755.68Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO1.137e-2755.68Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_SYNY31.940e-2756.82Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PORYE4.322e-2756.04Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_PORPU5.644e-2754.95Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO_CYACA9.628e-2759.09Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO1_SYNE72.801e-2652.27Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_GRIPA4.778e-2657.14Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
THIO_RICFE6.241e-2658.14Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2[more]
THIO_RICCN1.177e-2455.81Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC31402F07EF CTVClemen1 Citrus clementina cDNA clone C31402F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875321 ID=FC875321; Name=FC875321; organism=Citrus clementina; type=EST; length=758bp
GGAGAGAAAAAGAATATCAGTCATCGCCCAAAAGACCAAGGCCACATCTT
CTTCTATACTCCTATCAATACTCTTTTAACTTGCTGTGAACAGACACATA
CCCAGCAAAAGAAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTGT
TTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTTA
CCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGTAACGGGT
TGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCTTTCTCTT
CCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGTAAAGCTCGGGA
AGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAAAACCTTG
TGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACCTTGGTGC
GGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCAAAGAATA
CGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCCCCCAACA
TTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTTCTTCAAG
AATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAATCTACTTTG
TCCTCTACTTTAGATAATATGTAGAATGAATGGCCAAAAACACATTTCAT
GTTGTATGATGACATATAATCCAGTTATGTTCATTTCATAAAAAAAAAAA
AAAAAAAA
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