FC875321

Overview
NameFC875321
Unique NameFC875321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10205 contig Ccv1_Contig10205:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 1
Query:  421 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            ++++F+A WCGPCRMI+P  E+ + EY G     K+N D + +I  +Y I ++PT +F KN ++ + + GA
Sbjct:   25 IIIDFFANWCGPCRMISPIFEQFSAEY-GNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGA 94          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  394 NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            N +  S   ++V+F A WCGPCRMI PAI  +A ++   V   KL+ D+ P++A ++ + ++PT +  K G++ E IIGA
Sbjct:   41 NEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKF-NDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGA 119          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 1
Query:  343 AREAVNEVQVVTDSSWENLV-ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            A  A   V+V +   +E L+ + +++ ++V FWAPW   C  +   + ELAKE+  +V+  KL  +  P ++ KY I S+PT LFFKN +K + + GA
Sbjct:    6 AEAAAAVVEVGSSGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQ-QVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKIDRLDGA 102          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  334 LCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAK--EYA-GKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 624
            L  A  A + V  +  S+++++V+ S  P LVEF+APWCG C+ +AP  EELA   EYA  KV   K++ D    +  ++G++  PT+ FF +G+ ++ +
Sbjct:   12 LAAAVAAKSAVLDLIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAERALGKRFGVQGFPTLKFF-DGKSEQPV 110          
The following BLAST results are available for this feature:
BLAST of FC875321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
NGLY1_CAEEL7.406e-1139.44Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXH2_ARATH9.673e-1140.00Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
GLRX3_BOVIN9.673e-1136.73Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]
ERP38_NEUCR9.673e-1137.00Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionC31402F07EF CTVClemen1 Citrus clementina cDNA clone C31402F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875321 ID=FC875321; Name=FC875321; organism=Citrus clementina; type=EST; length=758bp
GGAGAGAAAAAGAATATCAGTCATCGCCCAAAAGACCAAGGCCACATCTT
CTTCTATACTCCTATCAATACTCTTTTAACTTGCTGTGAACAGACACATA
CCCAGCAAAAGAAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTGT
TTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTTA
CCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGTAACGGGT
TGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCTTTCTCTT
CCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGTAAAGCTCGGGA
AGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAAAACCTTG
TGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACCTTGGTGC
GGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCAAAGAATA
CGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCCCCCAACA
TTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTTCTTCAAG
AATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAATCTACTTTG
TCCTCTACTTTAGATAATATGTAGAATGAATGGCCAAAAACACATTTCAT
GTTGTATGATGACATATAATCCAGTTATGTTCATTTCATAAAAAAAAAAA
AAAAAAAA
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