FC875321

Overview
NameFC875321
Unique NameFC875321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10205 contig Ccv1_Contig10205:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_RICBR (Thioredoxin OS=Rickettsia bellii (strain RML369-C) GN=trxA PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.177e-24
Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VTD S+E  V+ S+ PVLV+FWA WC PCRM+ P IEE++K+   KV   K+N D++P I +KYGIRSIPTV+ FKNGE+K++ +G
Sbjct:    5 VTDKSFEEEVLKSDLPVLVDFWAEWCSPCRMLTPIIEEISKDLESKVKVLKMNIDENPEIPSKYGIRSIPTVMLFKNGEQKDTKVG 90          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_RICPR (Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.622e-24
Identity = 48/89 (53.93%), Postives = 69/89 (77.53%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            V  VTDSS++N V+ S+ PV+V+FWA WCGPC+M+ P I+E++KE   KV   K+N D++P   ++YGIRSIPT++ FKNGE+K++ IG
Sbjct:    2 VNNVTDSSFKNEVLESDLPVMVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGIRSIPTIMLFKNGEQKDTKIG 90          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.622e-24
Identity = 50/88 (56.82%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            + + ++EN V+ SE  VLV+FWAPWCGPCRMI P +EE+AKE+  KV   ++NTD++PN+AT YGIRSIPT++ FK G++ +++IGAV
Sbjct:    4 IDELTFENEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEFNLKVV--QVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAV 89          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.629e-24
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            VT  SWE+ V+ SE PVLVEF+  WCGPCRM+   I+E+A +YAGK+ C+ LN D+   +A +Y I+++P VL FKNGEK+ESI+G +
Sbjct:   71 VTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTM 158          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_HAEIN (Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.301e-23
Identity = 45/94 (47.87%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  355 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            ++EV  + D+ +E++V++S+ P+L++FWAPWCGPC+MIAP ++ELA E+AGKV   K+N DD+     ++G+RSIPT+L  KNG+   + +GA+
Sbjct:    1 MSEVLHINDADFESVVVNSDIPILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQVVATQVGAL 94          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_RICTY (Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.699e-23
Identity = 46/89 (51.69%), Postives = 68/89 (76.40%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            V  VTD S++N V+ S+ PV+V+FWA WCGPC+M+ P I+E++KE   KV   K+N D++P   ++YG+RSIPT++ FKNGE+K++ IG
Sbjct:    2 VNNVTDISFKNEVLESDLPVIVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGVRSIPTIMLFKNGEQKDTKIG 90          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_STRAU (Thioredoxin (Fragment) OS=Streptomyces aureofaciens GN=trxA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.458e-23
Identity = 45/87 (51.72%), Postives = 68/87 (78.16%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            VT++++++ V+ S+ PVLV F  PWCGPC+M+AP ++E+A EY GKV   K+NTD++P +A++YG+RSIPT L FK GE   +++GA
Sbjct:    6 VTNATFKSDVLESDKPVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTRLMFKGGEVAANMVGA 92          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.434e-23
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGAL 95          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.434e-23
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGAL 95          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.434e-23
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGAL 95          
The following BLAST results are available for this feature:
BLAST of FC875321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THIO_RICBR1.177e-2456.98Thioredoxin OS=Rickettsia bellii (strain RML369-C)... [more]
THIO_RICPR2.622e-2453.93Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 ... [more]
THIO_CYAME2.622e-2456.82Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
TRXM3_ARATH7.629e-2454.55Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]
THIO_HAEIN1.301e-2347.87Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3... [more]
THIO_RICTY1.699e-2351.69Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1[more]
THIO_STRAU6.458e-2351.72Thioredoxin (Fragment) OS=Streptomyces aureofacien... [more]
THIO_SHIFL8.434e-2352.27Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY8.434e-2352.27Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI8.434e-2352.27Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC31402F07EF CTVClemen1 Citrus clementina cDNA clone C31402F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875321 ID=FC875321; Name=FC875321; organism=Citrus clementina; type=EST; length=758bp
GGAGAGAAAAAGAATATCAGTCATCGCCCAAAAGACCAAGGCCACATCTT
CTTCTATACTCCTATCAATACTCTTTTAACTTGCTGTGAACAGACACATA
CCCAGCAAAAGAAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTGT
TTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTTA
CCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGTAACGGGT
TGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCTTTCTCTT
CCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGTAAAGCTCGGGA
AGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAAAACCTTG
TGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACCTTGGTGC
GGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCAAAGAATA
CGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCCCCCAACA
TTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTTCTTCAAG
AATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAATCTACTTTG
TCCTCTACTTTAGATAATATGTAGAATGAATGGCCAAAAACACATTTCAT
GTTGTATGATGACATATAATCCAGTTATGTTCATTTCATAAAAAAAAAAA
AAAAAAAA
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