FC875321

Overview
NameFC875321
Unique NameFC875321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10205 contig Ccv1_Contig10205:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 43/87 (49.43%), Postives = 65/87 (74.71%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            V DS +   V+ S+ PV+V+FWAPWCGPCR+IAP +++LA EYAG++   K+NTDD+   A++ GI+ IPT++ FK+G +   ++GA
Sbjct:    7 VHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGA 93          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  376 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            TD +++  +++S+   LV+FWA WCGPC M+ P IEELA +Y GK    KLN D++PN A +YGIRSIPT+L  K G+  + ++GA+
Sbjct:    9 TDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGAL 95          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.031e-20
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 609
            VTD S+E+ V+ S  PVLV++WA WCGPC+MIAP ++E+A EYAG++   KLN D++PN   +YGIR IPT++  +  E
Sbjct:    8 VTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLMLSRQSE 86          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.031e-20
Identity = 44/94 (46.81%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  355 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            +N++  +TD ++E  V++S++  LV+FWA WC PC+++AP +EE++KEY+ KV   KLN +++PN A  Y IRSIPT+L F N E   + +GAV
Sbjct:    1 MNKIIELTDQNFEEQVLNSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLFNNSEVLATKVGAV 94          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_PASMU (Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.347e-20
Identity = 43/92 (46.74%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  361 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            EV   TD+++   V++S+ PVL++FWAPWCGPCRMI+P ++E+A E++GKV   K+N D++     + G+RSIPT++ FKNG+   + +GA+
Sbjct:    2 EVLHSTDATFTADVVNSDVPVLLDFWAPWCGPCRMISPILDEIAAEFSGKVKVVKINIDENQATPAQLGVRSIPTLVLFKNGKAVATQVGAL 93          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_STRCL (Thioredoxin OS=Streptomyces clavuligerus GN=trxA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.728e-20
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            VTD ++E  V+ SE PVLV+FWA WCGPCR IAP++E +  E+ G++   KLN D +P  A KYG+ SIPT+  ++ GE  ++I+GA
Sbjct:    8 VTDDTFEADVLKSEKPVLVDFWAEWCGPCRQIAPSLEAIT-EHGGQIEIVKLNIDQNPATAAKYGVMSIPTLNVYQGGEVVKTIVGA 93          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.728e-20
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            +T+ ++E+ +   +   LV+FWAPWCGPC+M++P I+ELA EY GK    K+NTD+   ++ K+GIRSIPT+LF K+GE    ++G
Sbjct:    7 LTEENFESTI--KKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVG 90          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.728e-20
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            +T+ ++E+ +   +   LV+FWAPWCGPC+M++P I+ELA EY GK    K+NTD+   ++ K+GIRSIPT+LF K+GE    ++G
Sbjct:    7 LTEENFESTI--KKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVG 90          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_RHORU (Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.140e-19
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            V+D+S+E  V+ ++ P  V+FWA WCGPCR  APA+EELA     KV   K+N D++P   +KYG+R IPT++ FK+G+   + IGA+
Sbjct:    4 VSDASFEEDVLKADGPNXVDFWAEWCGPCRQXAPALEELATALGDKVTVAKINIDENPQTPSKYGVRGIPTLMIFKDGQVAATKIGAL 91          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.540e-19
Identity = 42/86 (48.84%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VTDS++++ + S  N  LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A K+ + SIPT++ FK+GE  + ++G
Sbjct:    6 VTDSNFDDNIQSGVN--LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVG 89          
The following BLAST results are available for this feature:
BLAST of FC875321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THIO_CHLAA4.628e-2149.43Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
THIO2_CHLTE6.045e-2149.43Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO_THIRO1.031e-2053.16Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO_BUCAI1.031e-2046.81Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]
THIO_PASMU1.347e-2046.74Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 ... [more]
THIO_STRCL8.728e-2050.57Thioredoxin OS=Streptomyces clavuligerus GN=trxA P... [more]
THIO_HELPY8.728e-2047.67Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ8.728e-2047.67Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIO_RHORU1.140e-1947.73Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 ... [more]
THIO_STAS12.540e-1948.84Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC31402F07EF CTVClemen1 Citrus clementina cDNA clone C31402F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875321 ID=FC875321; Name=FC875321; organism=Citrus clementina; type=EST; length=758bp
GGAGAGAAAAAGAATATCAGTCATCGCCCAAAAGACCAAGGCCACATCTT
CTTCTATACTCCTATCAATACTCTTTTAACTTGCTGTGAACAGACACATA
CCCAGCAAAAGAAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTGT
TTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTTA
CCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGTAACGGGT
TGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCTTTCTCTT
CCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGTAAAGCTCGGGA
AGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAAAACCTTG
TGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACCTTGGTGC
GGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCAAAGAATA
CGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCCCCCAACA
TTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTTCTTCAAG
AATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAATCTACTTTG
TCCTCTACTTTAGATAATATGTAGAATGAATGGCCAAAAACACATTTCAT
GTTGTATGATGACATATAATCCAGTTATGTTCATTTCATAAAAAAAAAAA
AAAAAAAA
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