FC875321

Overview
NameFC875321
Unique NameFC875321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10205 contig Ccv1_Contig10205:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_ALIAC (Thioredoxin OS=Alicyclobacillus acidocaldarius GN=trxA PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.540e-19
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            +TD++++   I  + PVLV+FWA WCGPCRM+AP +EE A+ +A KV   KLN D++P   +++GI SIPT++ FK G   + +IG
Sbjct:    5 LTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIG 89          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E A  +   KL+ D +P  A  + + SIPT++ FK+G+  + I+GA
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 98          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E A  +   KL+ D +P  A  + + SIPT++ FK+G+  + I+GA
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 98          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VTDS +++ + S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+GE  + ++G
Sbjct:    6 VTDSDFDSKIESGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVG 89          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VTDS +++ + S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+GE  + ++G
Sbjct:    6 VTDSDFDSKIESGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVG 89          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_BUCBP (Thioredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  358 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            N +  +TD  ++  ++ S+  VLV+FWA WC PC+++AP +E++AKEY  K+   K+N D +PN A KY IR IP +L FKN E   + +GA+
Sbjct:    3 NCIVELTDGIFKQYILESKKAVLVDFWAEWCNPCKILAPILEDIAKEYEHKLIVTKINIDKNPNTAPKYSIRGIPALLLFKNSELVGTKVGAL 95          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.650e-19
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.650e-19
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.650e-19
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.650e-19
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
The following BLAST results are available for this feature:
BLAST of FC875321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THIO_ALIAC2.540e-1947.67Thioredoxin OS=Alicyclobacillus acidocaldarius GN=... [more]
THIO_MYCTU3.317e-1948.28Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO3.317e-1948.28Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
THIO_STAES4.332e-1948.84Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ4.332e-1948.84Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_BUCBP4.332e-1944.09Thioredoxin OS=Buchnera aphidicola subsp. Baizongi... [more]
THIO_STAAW9.650e-1947.67Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU9.650e-1947.67Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS9.650e-1947.67Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR9.650e-1947.67Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]

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Properties
Property NameValue
Genbank descriptionC31402F07EF CTVClemen1 Citrus clementina cDNA clone C31402F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875321 ID=FC875321; Name=FC875321; organism=Citrus clementina; type=EST; length=758bp
GGAGAGAAAAAGAATATCAGTCATCGCCCAAAAGACCAAGGCCACATCTT
CTTCTATACTCCTATCAATACTCTTTTAACTTGCTGTGAACAGACACATA
CCCAGCAAAAGAAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTGT
TTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTTA
CCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGTAACGGGT
TGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCTTTCTCTT
CCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGTAAAGCTCGGGA
AGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAAAACCTTG
TGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACCTTGGTGC
GGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCAAAGAATA
CGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCCCCCAACA
TTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTTCTTCAAG
AATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAATCTACTTTG
TCCTCTACTTTAGATAATATGTAGAATGAATGGCCAAAAACACATTTCAT
GTTGTATGATGACATATAATCCAGTTATGTTCATTTCATAAAAAAAAAAA
AAAAAAAA
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