FC875321

Overview
NameFC875321
Unique NameFC875321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10205 contig Ccv1_Contig10205:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  400 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+  + + GAV
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAV 126          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  400 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+  + + GAV
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAV 126          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  400 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+  + + GAV
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAV 126          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.104e-17
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  355 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            +N++  +TD ++E  V+  ++ VLV+FWA WC PC+++AP +EE+A+EY  K+   KLN + +PN A  Y IR IP +L F   E   + +GA+
Sbjct:    1 MNKIIELTDQNFEKEVLEHKSFVLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLFHGREVLATKVGAI 94          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-17
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  406 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            +SE  VL +FWAPWCGPC+MIAP +EEL +E   K+   K++ D++   A KYG+ SIPT+L  K+GE  E+ +G
Sbjct:   15 TSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVG 89          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.541e-16
Identity = 32/82 (39.02%), Postives = 57/82 (69.51%), Query Frame = 1
Query:  391 ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            ++L+ +SE PV ++FWA WCGPC+M+AP++++LA E+ G++   K+N D  P+ A ++ ++ IP ++ F  G+ K    GA+
Sbjct:    6 DDLIRTSELPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQLKWRTAGAI 87          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  373 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT--KYGIRSIPTVLFFKNGEKKESIIGA 633
            VTD S+   V+ S  PVLV+FWA WCGPC+M+AP +EE+A E   ++   K++ D   N AT   + + SIPT++ FK+G   + I+GA
Sbjct:   10 VTDDSFSTDVLGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGA 98          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            V+ +TD+++E    +SE  VL +FWA WCGPCRM+AP +EE+ +E    +   K++ D++P     +G+ SIPT+L  K+GE  E+IIG
Sbjct:    2 VKEITDATFEQE--TSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIG 88          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            V+ +TD+++E    +SE  VL +FWA WCGPCRM+AP +EE+ +E    +   K++ D++P     +G+ SIPT+L  K+GE  E+IIG
Sbjct:    2 VKEITDATFEQE--TSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIG 88          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.906e-15
Identity = 31/80 (38.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  391 ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            + L+++ +  V+++F+A WCGPC++IAP ++ELA EY+ +V   K+N D++ +I  +Y + S+PT +F K G   E  +G
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVG 92          
The following BLAST results are available for this feature:
BLAST of FC875321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THIO2_ECOLI2.150e-1846.84Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]
THIO2_ECOL62.150e-1846.84Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO572.150e-1846.84Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]
THIO_BUCAP3.104e-1741.49Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
THIO_BACSU4.054e-1750.67Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO1_CHLTE1.541e-1639.02Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO_MYCSM2.628e-1644.94Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIO_LISMO3.432e-1643.82Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN3.432e-1643.82Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIOT_DROME2.906e-1538.75Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]

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Properties
Property NameValue
Genbank descriptionC31402F07EF CTVClemen1 Citrus clementina cDNA clone C31402F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875321 ID=FC875321; Name=FC875321; organism=Citrus clementina; type=EST; length=758bp
GGAGAGAAAAAGAATATCAGTCATCGCCCAAAAGACCAAGGCCACATCTT
CTTCTATACTCCTATCAATACTCTTTTAACTTGCTGTGAACAGACACATA
CCCAGCAAAAGAAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTGT
TTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTTA
CCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGTAACGGGT
TGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCTTTCTCTT
CCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGTAAAGCTCGGGA
AGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAAAACCTTG
TGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACCTTGGTGC
GGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCAAAGAATA
CGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCCCCCAACA
TTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTTCTTCAAG
AATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAATCTACTTTG
TCCTCTACTTTAGATAATATGTAGAATGAATGGCCAAAAACACATTTCAT
GTTGTATGATGACATATAATCCAGTTATGTTCATTTCATAAAAAAAAAAA
AAAAAAAA
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