FC875321

Overview
NameFC875321
Unique NameFC875321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10205 contig Ccv1_Contig10205:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  397 LVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            L  +S   V+++F+A WCGPC+MI+P + EL+ ++A  V   K++ D+  +IA +Y I S+PT +F KNG K E   GA
Sbjct:   23 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGA 101          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO2_CAEEL (Probable thioredoxin-2 OS=Caenorhabditis elegans GN=trx-2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  400 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            VI S  PV+V+F A WCGPC+ + P +EE      G V   K+N D +  +A  YGI ++PTV  FKNGEK     G +
Sbjct:   52 VIQSSVPVIVDFHAEWCGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEKISGFSGVL 130          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 30/83 (36.14%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 612
            ++ + +S + + V+ S  PVLVEF A WCGPC++I PA+E L++EY  K+   K++ D +P +  ++ +  +P  + FK+G++
Sbjct:   71 IKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKE 153          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 636
            V  +TD+ +E+ V+ +E PVLV FWA WCGPC++++P I   A  Y+ ++   KL  D +P    KY +  +P +   K  +  +S  G +
Sbjct:    5 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVI 95          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  418 PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            P++V+F A WCGPC+MIAP  E L+ +YAGKV   K++ D    +A   GI ++PT   +K+G K + ++GA
Sbjct:   27 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGA 98          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            VQ+V+  ++ + + S    VLV+F+A WCGPC+M+ P +E LA E    V   KL+ D SP  A ++G+ SIPT++ FK+G++ E  +G
Sbjct:    2 VQIVSQDNFADSIASGL--VLVDFFAEWCGPCKMLTPVLEALAAELP-YVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVG 87          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 31/84 (36.90%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  382 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            + ++  V  +  PV+V+F A WCGPC+ IAPA+E+L++ + G +  +K++ D+   +A   G+ ++PT  F+K GE+ E + GA
Sbjct:   10 AEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTG-IQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGA 92          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_MYCGE (Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  400 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            + S++  V+V+FWA WCGPC++ +P  ++ A E++      K+N DD  +IA  Y I S+PT++ F+NG +K+  IG
Sbjct:   14 IFSAKKNVIVDFWAAWCGPCKLTSPEFQKAADEFS-DAQFVKVNVDDHTDIAAAYNITSLPTIVVFENGVEKKRAIG 89          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 34/89 (38.20%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 630
            V+VV+  ++ + + +    VL++F+A WCGPC+M+ P +E L  E +  V   K+N DD P  A +YG+ SIPT++ FK+G++ + ++G
Sbjct:    2 VKVVSAENFNSFIATGL--VLIDFFAEWCGPCKMLTPVLESLEAEVSS-VLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVG 87          
BLAST of FC875321 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  364 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 633
            V+ V+DSS    ++  +  V+V+F+A WCGPC+ IAP  E+ +  Y+      K++ D    IA + G+ ++P+   +KNGEK E I+GA
Sbjct:    2 VKQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYS-DATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGA 90          
The following BLAST results are available for this feature:
BLAST of FC875321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THIO2_DROME2.082e-1343.04Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO2_CAEEL2.082e-1344.30Probable thioredoxin-2 OS=Caenorhabditis elegans G... [more]
TRXX_ARATH3.552e-1336.14Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO2_ANASP4.639e-1335.16Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
TRXH_CHLRE6.059e-1344.44Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_CHLMU6.059e-1341.57Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_PENCH7.913e-1336.90Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_MYCGE7.913e-1340.26Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 ... [more]
THIO_CHLCV7.913e-1338.20Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRX1_SCHPO1.033e-1237.78Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]

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Properties
Property NameValue
Genbank descriptionC31402F07EF CTVClemen1 Citrus clementina cDNA clone C31402F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875321 ID=FC875321; Name=FC875321; organism=Citrus clementina; type=EST; length=758bp
GGAGAGAAAAAGAATATCAGTCATCGCCCAAAAGACCAAGGCCACATCTT
CTTCTATACTCCTATCAATACTCTTTTAACTTGCTGTGAACAGACACATA
CCCAGCAAAAGAAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTGT
TTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTTA
CCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGTAACGGGT
TGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCTTTCTCTT
CCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGTAAAGCTCGGGA
AGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAAAACCTTG
TGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACCTTGGTGC
GGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCAAAGAATA
CGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCCCCCAACA
TTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTTCTTCAAG
AATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAATCTACTTTG
TCCTCTACTTTAGATAATATGTAGAATGAATGGCCAAAAACACATTTCAT
GTTGTATGATGACATATAATCCAGTTATGTTCATTTCATAAAAAAAAAAA
AAAAAAAA
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