FC875324

Overview
NameFC875324
Unique NameFC875324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10475 contig Ccv1_Contig10475:88..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: EEDA_XENLA (Polycomb protein eed-A OS=Xenopus laevis GN=eed-A PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.417e-37
Identity = 84/188 (44.68%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIW 686
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD+++K+W
Sbjct:   76 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLW 260          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: ESC_DROVI (Polycomb protein esc OS=Drosophila virilis GN=esc PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.046e-36
Identity = 72/155 (46.45%), Postives = 102/155 (65.81%), Query Frame = 3
Query:  231 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 692
            VFAT G NR TVY+C   G +  L  Y D D +E FYT +W+ ++    P L A G  G+IRVID+   +   +++GHG +INE++  P K  L++S SKD ++RLWN+QT +CI IF G  GHR+EVLS+DF+     RI S GMD+++K+W +
Sbjct:   92 VFATAGSNRCTVYECPRKGGLTLLHCYADPDPDEVFYTCAWSYDLKTSAPLLAAAGYRGVIRVIDIEQNEAVDNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNIQTHVCIAIFGGVEGHRDEVLSIDFNMRG-DRIVSSGMDHSLKLWCL 245          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: ESC_DROME (Polycomb protein esc OS=Drosophila melanogaster GN=esc PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.491e-36
Identity = 78/191 (40.84%), Postives = 115/191 (60.21%), Query Frame = 3
Query:  129 PSKKREYRVTNKLQEGKRP-LYAVVFN-FIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 692
            P  +  Y+    ++E     ++ V FN  +      VFAT G NRVTVY+C   G +  L  Y D D +E FYT +W+ ++    P L A G  G+IRVIDV   +   +++GHG +INE++  P K  L++S SKD ++RLWN+Q+ +CI I  G  GHR+EVLS+DF+     RI S GMD+++K+W +
Sbjct:   56 PKSRAAYKYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNRVTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRGVIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNIQSHVCIAILGGVEGHRDEVLSIDFNMRG-DRIVSSGMDHSLKLWCL 245          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: ESC_MUSDO (Polycomb protein esc OS=Musca domestica GN=esc PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.263e-35
Identity = 77/192 (40.10%), Postives = 118/192 (61.46%), Query Frame = 3
Query:  120 SLTPSKKREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 686
            S + +K+  Y+    L+E   + ++ V FN +  +  + VFAT G NR  +Y+C   G +  +  Y D D +E FYT SW+ ++    P L   G  G+IRVID+   +   ++VGHG +INE++  P + +L++S SKD ++RLWN+QT +CI IF G  GHR+EVLS+DF      RI S GMD+++K+W
Sbjct:   54 SKSKAKRPAYKYDCHLKEDHGQAIFGVSFNHLLGKDQSMVFATAGSNRCNIYECPRKGGLKLIMCYADPDPDEVFYTCSWSYDLKTSAPLLATAGYRGVIRVIDIHRNESVGNYVGHGQAINELKFHPRQANLLLSGSKDHAIRLWNIQTHVCIAIFGGVEGHRDEVLSIDFDLRG-ERIMSSGMDHSLKLW 244          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: MES6_CAEEL (Polycomb protein mes-6 OS=Caenorhabditis elegans GN=mes-6 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 65/203 (32.02%), Postives = 98/203 (48.28%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNF---IDSRYFNVFATVGGNRVTVYQC--------LEGGVIAALQSYVDEDKEESFYTVSWACNV-----DGIPF-LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 692
            KR + +T KL E  K+ +Y   FN    ID       ATVGG+ + +Y          L+             ++EES +TV+W  +      D  PF +V GG  G I VID  + KL       G  IN+IRT P   +L+V AS D+S+R+ +++   C+++  G   H   +LSVD+     + I SCG D+ +  W +
Sbjct:   24 KRPFVLTAKLLEDQKKAIYGCAFNQYAGIDEE--QAVATVGGSFLHMYSVPIDINNIELQWSCNFPTDKSSKVEREESLFTVTWCYDTYEAENDRNPFKVVTGGTLGHIYVIDYVSRKLSNRLRSVGWEINDIRTCPANSNLIVCASSDQSIRIHHIRNEACLIVIGGLECHAGTILSVDWSTDGDF-ILSCGFDHQLMEWDL 223          
The following BLAST results are available for this feature:
BLAST of FC875324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
EEDA_XENLA1.417e-3744.68Polycomb protein eed-A OS=Xenopus laevis GN=eed-A ... [more]
ESC_DROVI2.046e-3646.45Polycomb protein esc OS=Drosophila virilis GN=esc ... [more]
ESC_DROME3.491e-3640.84Polycomb protein esc OS=Drosophila melanogaster GN... [more]
ESC_MUSDO2.263e-3540.10Polycomb protein esc OS=Musca domestica GN=esc PE=... [more]
MES6_CAEEL1.801e-1632.02Polycomb protein mes-6 OS=Caenorhabditis elegans G... [more]

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Properties
Property NameValue
Genbank descriptionC31402F10EF CTVClemen1 Citrus clementina cDNA clone C31402F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875324 ID=FC875324; Name=FC875324; organism=Citrus clementina; type=EST; length=712bp
GATCCCCAGAATACATCGACGAAACGCTTCAGTGGTTTTCTTGCATAGGT
TACGCAGTGACGGGTGCTAACGTGCGCAGGATGGCGAGGACTGCGATCGG
CTGCGAGCCACTGGTAGGATCACTAACGCCGTCGAAAAAACGCGAGTACA
GAGTCACTAATAAGCTCCAAGAAGGCAAGCGTCCTTTGTACGCCGTCGTT
TTCAACTTCATCGACTCCCGCTACTTCAACGTCTTCGCCACCGTCGGTGG
AAATCGCGTAACTGTATACCAATGTCTTGAGGGGGGTGTTATTGCAGCAT
TGCAGTCTTATGTTGATGAAGATAAGGAAGAGTCATTTTATACTGTGAGC
TGGGCTTGCAATGTGGATGGGATCCCCTTCTTAGTGGCAGGAGGCATCAA
TGGTATCATCCGAGTAATTGATGTCAGTAATGAGAAACTTCACAAGAGTT
TTGTTGGCCATGGGGATTCAATAAATGAAATCAGGACCCAGCCACTGAAA
CCCTCACTTGTGGTGTCTGCAAGCAAAGATGAATCAGTTCGTCTCTGGAA
TGTGCAAACTGGAATATGCATTTTGATATTTGCTGGTGCTGGGGGTCACC
GTAATGAAGTTTTGAGCGTGGACTTTCATCCTTCAGATATCTATCGCATT
GCAAGTTGTGGCATGGACAACACTGTCAAGATTTGGTCAATGAAANGAGT
CTGGACATATGT
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