FC875331

Overview
NameFC875331
Unique NameFC875331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14410 contig Ccv1_Contig14410:83..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E1_MAIZE (Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.795e-26
Identity = 56/142 (39.44%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMAL 589
            HPL++ + FW+       + Q ++  +I+ I  FSTVE FW  Y ++  PS L    D H FK  I P WED    NGGKW I   +  S  FW   +LA++G+Q DYGD ICGAV+S+R  ++ +++W +NA++  A +++
Sbjct:   43 HPLEHSWTFWFDNPQSKSK-QAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQVSI 183          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: I4E1B_MOUSE (Eukaryotic translation initiation factor 4E type 1B OS=Mus musculus GN=Eif4e1b PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 60/186 (32.26%), Postives = 97/186 (52.15%), Query Frame = 2
Query:  101 SVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            S+    + A      E+ + LHPL+ ++V W+ +         +++DN++ +  F+TVE FW  Y H+   S L S  D  LFKEGI P+WED+ N  GG+W++   K +      R W + +L LVG+   +Y   +CGAV++IR   D +++W   A D   VM +    K  L +    ++ Y
Sbjct:   44 SLKTQRRKAHREHPPEVLSKLHPLQYRWVLWFFKND----RSRAWQDNLQLVTKFNTVEDFWAVYSHIKLASKLSSGCDYALFKEGILPMWEDNRNKQGGRWLLSIDKQLRHFELDRLWLETLLCLVGNCFEEYSREVCGAVVNIRTKRDKIALWTSEAEDKAGVMQIGQIYKERLGISTKTIIGY 225          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_BOVIN (Eukaryotic translation initiation factor 4E OS=Bos taurus GN=EIF4E PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 58/165 (35.15%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K        RFW + VL L+G+   DY D++CGAV+++R   D +++W     + +AV  +    K  L LP   V+ Y
Sbjct:   37 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETVLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: I4E1B_HUMAN (Eukaryotic translation initiation factor 4E type 1B OS=Homo sapiens GN=EIF4E1B PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 57/171 (33.33%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  146 ELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK----VVSGRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            E+K  LHPL+N++  W+ +         +++DN+  +    TVE FW  Y H+   S L S  D  LFK+GI+P+WEDS N  GG+W++   K    +   R W + +L L+G+   ++   +CGAV++IR   D ++VW R A +   V+ +    K  L L    ++ Y
Sbjct:   56 EVKLELHPLQNRWALWFFKND----RSRAWQDNLHLVTKVDTVEDFWALYSHIQLASKLSSGCDYALFKDGIQPMWEDSRNKRGGRWLVSLAKQQRHIELDRLWLETLLCLIGESFEEHSREVCGAVVNIRTKGDKIAVWTREAENQAGVLHVGRVYKERLGLSPKTIIGY 222          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_HUMAN (Eukaryotic translation initiation factor 4E OS=Homo sapiens GN=EIF4E PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.421e-25
Identity = 57/165 (34.55%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+   DY D++CGAV+++R   D +++W     + +AV  +    K  L LP   V+ Y
Sbjct:   37 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_RAT (Eukaryotic translation initiation factor 4E OS=Rattus norvegicus GN=Eif4e PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 57/165 (34.55%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+   DY D++CGAV+++R   D +++W     +  AV  +    K  L LP   V+ Y
Sbjct:   37 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_RABIT (Eukaryotic translation initiation factor 4E OS=Oryctolagus cuniculus GN=EIF4E PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 57/165 (34.55%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+   DY D++CGAV+++R   D +++W     +  AV  +    K  L LP   V+ Y
Sbjct:   37 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_MOUSE (Eukaryotic translation initiation factor 4E OS=Mus musculus GN=Eif4e PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 57/165 (34.55%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+   DY D++CGAV+++R   D +++W     +  AV  +    K  L LP   V+ Y
Sbjct:   37 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4EA_DANRE (Eukaryotic translation initiation factor 4E-1A OS=Danio rerio GN=eif4e1a PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 60/192 (31.25%), Postives = 100/192 (52.08%), Query Frame = 2
Query:   83 TQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK----VVSGRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            T T   + +  N++ E++         HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L S  D  LFK+GI P+WED  N  GG+W+I   K        RFW + +L LVG+   D+ D++CGAV++IR   D +++W  +  +  A++ +    K  L +P   ++ Y
Sbjct:    8 TSTNPSNSEEKNEENEQQIVSLEDYIKHPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMSGCDYSLFKDGIEPMWEDERNKRGGRWLITLSKQQRRADLDRFWLETLLCLVGEAFDDHSDDVCGAVVNIRTKGDKIAIWTTDYENKDAIVHIGRVYKERLGVPPKVIIGY 195          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_XENLA (Eukaryotic translation initiation factor 4E OS=Xenopus laevis GN=eif4e PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 56/165 (33.94%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L S  D  LFK+GI P+WED  N  GG+W+I   K        RFW + ++ L+G+  D + D++CGAV+++R   D +++W     +  AV  +    K  L LP   V+ Y
Sbjct:   33 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMSGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRNDLDRFWLETLMCLIGESFDEHSDDVCGAVVNVRAKGDKIAIWTTEFENKDAVTHIGRVYKERLGLPAKVVIGY 193          
The following BLAST results are available for this feature:
BLAST of FC875331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E1_MAIZE1.795e-2639.44Eukaryotic translation initiation factor 4E-1 OS=Z... [more]
I4E1B_MOUSE6.821e-2632.26Eukaryotic translation initiation factor 4E type 1... [more]
IF4E_BOVIN1.985e-2535.15Eukaryotic translation initiation factor 4E OS=Bos... [more]
I4E1B_HUMAN3.385e-2533.33Eukaryotic translation initiation factor 4E type 1... [more]
IF4E_HUMAN4.421e-2534.55Eukaryotic translation initiation factor 4E OS=Hom... [more]
IF4E_RAT7.541e-2534.55Eukaryotic translation initiation factor 4E OS=Rat... [more]
IF4E_RABIT7.541e-2534.55Eukaryotic translation initiation factor 4E OS=Ory... [more]
IF4E_MOUSE7.541e-2534.55Eukaryotic translation initiation factor 4E OS=Mus... [more]
IF4EA_DANRE7.541e-2531.25Eukaryotic translation initiation factor 4E-1A OS=... [more]
IF4E_XENLA2.866e-2433.94Eukaryotic translation initiation factor 4E OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionC31402G05EF CTVClemen1 Citrus clementina cDNA clone C31402G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875331 ID=FC875331; Name=FC875331; organism=Citrus clementina; type=EST; length=687bp
GAAAGAAGAACAAAATTTAAAAAAAGAAAAAGAAAATCAATAAATGGAAA
TAACAGATAAGAAGGAATCCGATATCAATAACACACAAACAGTCGCCGAT
TCCGTCGATAACAATAACAAAGACGCCGAAGAACGCCAAGCTCGTGAACT
TAAAGCCAATTTGCATCCTCTTAAGAACAAGTTTGTCTTTTGGTACACTC
GTCGAACACCCGGAGTTCGAACTCAAACATCGTACGAGGACAACATAAAG
AAAATTGTGGACTTCAGTACTGTTGAAGGTTTTTGGGTCTGCTATTGCCA
CTTGGCTCGTCCTTCTTTGTTGCCAAGCCCTACAGATTTGCATCTTTTCA
AGGAAGGAATTCGCCCATTATGGGAGGACTCTGCAAATTGCAATGGCGGT
AAATGGATAATAAGGTTCAAGAAAGTTGTATCAGGTCGCTTTTGGGAAGA
TCTGGTTCTTGCCTTGGTGGGTGACCAGCTTGACTATGGTGATAACATAT
GTGGTGCAGTCCTAAGCATTCGATTCAATGAAGATATATTGAGTGTGTGG
AACCGCAATGCATCTGATCATCAGGCTGTGATGGCTCTTAGAGATTCTAT
CAAACGGCACTTAAAGCTTCCCCACAGCTATGTTATGGAATACAGCCCCA
TGATGCTTCTCTGCGCGATACTCGTCATACAGAACAC
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