FC875331

Overview
NameFC875331
Unique NameFC875331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14410 contig Ccv1_Contig14410:83..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E2_WHEAT (Eukaryotic translation initiation factor 4E-2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 58/139 (41.73%), Postives = 76/139 (54.68%), Query Frame = 2
Query:  164 HPLKNKFVFWY---TRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW-IIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 568
            H L+ ++ FWY   T+  PG    TS    +KK   F TVE FW  Y  + RPS L    D HLFK G+ P WED    NGGKW +I  +K      W +  +AL+G+Q D    ICG V S+R  +D LS+W + AS+
Sbjct:   33 HKLQRQWTFWYDIQTKPKPGAAWGTS----LKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASVRQRQDKLSLWTKTASN 167          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E4_ARATH (Putative eukaryotic translation initiation factor 4E-4 OS=Arabidopsis thaliana GN=At1g29550 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMAL 589
            H  +N + FW+   +     Q  +  +++ +  F T+E FW  Y ++  P+   S  DL+ FK+ I P WED    NGGKW + F K      W + +LALVG+Q D GD ICGAVL+ R   D +S+W +NA++ +A +++
Sbjct:   65 HCFQNSWTFWFDNPS-SKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPICANGGKWSMMFPKATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARGDRISLWTKNAANEEAQLSI 205          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_APLCA (Eukaryotic translation initiation factor 4E OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 60/184 (32.61%), Postives = 92/184 (50.00%), Query Frame = 2
Query:  107 DNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            D+  +  EER         HPL+N +  W+ +          ++DN++ I  F TVE FW  Y H    S L S  D  +FK GI+P+WED+ N  GG+W+I   K         FW + +L L+G+  D + + ICGA ++IR   D L +W R+A   +A   +   +K  L +P   V+ +
Sbjct:   16 DDEPEVEEERVPDPDMVIKHPLQNSWAMWFFKNDKS----RDWKDNLRVITTFDTVEDFWGLYNHTLPASKLQSGCDYSVFKAGIQPMWEDAQNKKGGRWLINLNKTQRQTHLDDFWLETLLCLIGEGFDEHSEEICGATVNIRNKGDKLGLWTRDAQKTEATKKIGIKLKESLSVPPKIVIGF 195          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E2_MAIZE (Eukaryotic translation initiation factor 4E-2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 53/136 (38.97%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRF-KKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 568
            H L  ++ FWY  +T   ++  ++  ++KK   F TVE FW  Y  + RPS L    D HLFK G+ P WED    NGGKW +   +K      W + ++AL+G+Q D  ++ICG V S+R   D L++W R AS+
Sbjct:   40 HKLHRQWTFWYDIQTK-TKSGAAWGTSLKKAYTFDTVEEFWSMYDQIFRPSKLSGNADFHLFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETLMALIGEQFDETEDICGIVASVRARGDKLALWTRTASN 174          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4EB_DANRE (Eukaryotic translation initiation factor 4E-1B OS=Danio rerio GN=eif4e1b PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 56/165 (33.94%), Postives = 89/165 (53.94%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK----VVSGRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            HPL+N++  W+ +          ++DN++ I  F TVE FW  Y ++  PS L S  D  +FK+GI P+WED +N  GG+W+I   K         FW + +L L+G+    +  +ICG+V++IR   D +++W  NA + + V  +    K  L LP   V+ Y
Sbjct:   34 HPLQNRWGLWFYKNDKS----KMWQDNLRLITKFDTVEDFWGLYNNIQLPSKLSSGCDYSMFKDGIEPMWEDRSNKCGGRWLITLAKQHRHTELDHFWLETLLCLIGEGFSSFSRDICGSVINIRAKGDKIALWTSNAENCETVTYIGRKYKESLGLPQKLVIGY 194          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E5_ARATH (Eukaryotic translation initiation factor 4E-5 OS=Arabidopsis thaliana GN=At1g29590 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 50/142 (35.21%), Postives = 82/142 (57.75%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMAL 589
            H  +N + FW+   +     Q  +  +++ +  F+T+E FW  Y ++  P+   S +DL+ FK+ I P WED    NGGKW + F +      W + +LALVG+Q D GD ICGAVL+ R   D +S+W + A++ +A +++
Sbjct:   65 HCFQNSWTFWFDNPS-SKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDLYCFKDKIEPKWEDPICANGGKWTMFFPRATLESNWLNTLLALVGEQFDQGDEICGAVLNFRTRGDRISLWTKKAANEEAQLSI 205          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_YEAST (Eukaryotic translation initiation factor 4E OS=Saccharomyces cerevisiae GN=TIF45 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 57/165 (34.55%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWI--IRFKKVVSGRFWEDLVLALVGDQLDYGDN-ICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYSP 649
            HPL  K+  WYT+  P V    S+ D ++ +  F TVE FW    ++  P  LP  +D H+F+  +RP WED AN  GGKW   +R K       W   +LA++G+ +D  D+ I G VLSIR   +  ++W + + D + ++ +    K+ LKL     +E+ P
Sbjct:   37 HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTK-SEDKEPLLRIGGKFKQVLKLTDDGHLEFFP 198          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E2_ORYSJ (Eukaryotic translation initiation factor 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 54/139 (38.85%), Postives = 75/139 (53.96%), Query Frame = 2
Query:  164 HPLKNKFVFWY---TRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIR-FKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASD 568
            H L  ++ FWY   ++  PG    TS    ++K   F TVE FW  Y  + RPS +    D HLFK G+ P WED    NGGKW +   +K      W + ++AL+G+Q D  + ICG V S+R   D L++W R AS+
Sbjct:   30 HKLHRQWAFWYDIQSKPKPGAAWGTS----LRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASN 164          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_CANGA (Eukaryotic translation initiation factor 4E OS=Candida glabrata GN=TIF45 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 64/204 (31.37%), Postives = 102/204 (50.00%), Query Frame = 2
Query:   47 EITDKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWI--IRFKKVVSGRFWEDLVLALVGDQLDYGDN-ICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYSP 649
            E+T K E  +        SVD       + +  E+K   HPL  K+  WYT+  P V    S+ D ++ +  F +VE FW    ++  P  LP  +D H+F+  IRP WEDSAN  GGKW   +R +       W   +LA++G+ +D  D+ I G VL++R   +  ++W ++  D + +  +    K+ LKL     +E+ P
Sbjct:    5 EVTKKFEETV--------SVDGPKTVLSDAKDFEVK---HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQSVEEFWAIVQNIPEPHELPLKSDYHVFRNDIRPEWEDSANAKGGKWSFQVRGRGAEIDELWLRTLLAVIGETIDEEDSQINGVVLNVRKGGNRFALWTKSC-DKEPLSNIGARFKQVLKLADEDTLEFFP 194          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_CANAL (Eukaryotic translation initiation factor 4E OS=Candida albicans GN=TIF45 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/205 (30.73%), Postives = 103/205 (50.24%), Query Frame = 2
Query:   47 EITDKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK-----VVSGRFWEDLVLALVGDQLDYGDN-ICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            E+  K E    +++TV DS +  N               HPL +++  WYT+  P      ++ D +K ++ FS+VE FW  Y  +   + LP  +D HLFKEGIRP WED AN  GGKW   F K      +    W   +LA++G+ ++  +N + G VL+IR     + +W ++  D   +  + + +K+ L+L     +E+
Sbjct:    4 ELAQKTEELSLDSKTVFDSKEEFNAK-------------HPLNSRWTLWYTK--PQTNKSENWHDLLKPVITFSSVEEFWGIYNSIPPANQLPLKSDYHLFKEGIRPEWEDEANSKGGKWQFSFNKKSEVNPIINDLWLRGLLAVIGETIEDEENEVNGIVLNIRKQAYRVGIWTKDC-DESKLKTVGERLKKVLQLNDEQKVEF 192          
The following BLAST results are available for this feature:
BLAST of FC875331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E2_WHEAT3.743e-2441.73Eukaryotic translation initiation factor 4E-2 OS=T... [more]
IF4E4_ARATH1.089e-2336.62Putative eukaryotic translation initiation factor ... [more]
IF4E_APLCA1.857e-2332.61Eukaryotic translation initiation factor 4E OS=Apl... [more]
IF4E2_MAIZE1.857e-2338.97Eukaryotic translation initiation factor 4E-2 OS=Z... [more]
IF4EB_DANRE2.426e-2333.94Eukaryotic translation initiation factor 4E-1B OS=... [more]
IF4E5_ARATH5.404e-2335.21Eukaryotic translation initiation factor 4E-5 OS=A... [more]
IF4E_YEAST2.682e-2234.55Eukaryotic translation initiation factor 4E OS=Sac... [more]
IF4E2_ORYSJ2.682e-2238.85Eukaryotic translation initiation factor 4E-2 OS=O... [more]
IF4E_CANGA1.019e-2131.37Eukaryotic translation initiation factor 4E OS=Can... [more]
IF4E_CANAL1.019e-2130.73Eukaryotic translation initiation factor 4E OS=Can... [more]

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Properties
Property NameValue
Genbank descriptionC31402G05EF CTVClemen1 Citrus clementina cDNA clone C31402G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875331 ID=FC875331; Name=FC875331; organism=Citrus clementina; type=EST; length=687bp
GAAAGAAGAACAAAATTTAAAAAAAGAAAAAGAAAATCAATAAATGGAAA
TAACAGATAAGAAGGAATCCGATATCAATAACACACAAACAGTCGCCGAT
TCCGTCGATAACAATAACAAAGACGCCGAAGAACGCCAAGCTCGTGAACT
TAAAGCCAATTTGCATCCTCTTAAGAACAAGTTTGTCTTTTGGTACACTC
GTCGAACACCCGGAGTTCGAACTCAAACATCGTACGAGGACAACATAAAG
AAAATTGTGGACTTCAGTACTGTTGAAGGTTTTTGGGTCTGCTATTGCCA
CTTGGCTCGTCCTTCTTTGTTGCCAAGCCCTACAGATTTGCATCTTTTCA
AGGAAGGAATTCGCCCATTATGGGAGGACTCTGCAAATTGCAATGGCGGT
AAATGGATAATAAGGTTCAAGAAAGTTGTATCAGGTCGCTTTTGGGAAGA
TCTGGTTCTTGCCTTGGTGGGTGACCAGCTTGACTATGGTGATAACATAT
GTGGTGCAGTCCTAAGCATTCGATTCAATGAAGATATATTGAGTGTGTGG
AACCGCAATGCATCTGATCATCAGGCTGTGATGGCTCTTAGAGATTCTAT
CAAACGGCACTTAAAGCTTCCCCACAGCTATGTTATGGAATACAGCCCCA
TGATGCTTCTCTGCGCGATACTCGTCATACAGAACAC
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