FC875331

Overview
NameFC875331
Unique NameFC875331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14410 contig Ccv1_Contig14410:83..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E3_DANRE (Eukaryotic translation initiation factor 4E type 3 OS=Danio rerio GN=eif4e3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 60/180 (33.33%), Postives = 93/180 (51.67%), Query Frame = 2
Query:   53 TDKKESDINNTQTVADSVDNNNKDAEERQARELKANLH-----PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQL-DY---GDNICGAVLSIRFNEDILSVWNRNAS 565
            T ++ S +N+T+        N+   +ER+   +  ++      PL + + FW  R  PG  T    E N+KKI    TV+ FW  Y ++   S LP     HL +   RPLWE+ +N  GG W ++  K  +   W++L+LA +G+Q  DY    D + G  +S+R  ED++ VWN NAS
Sbjct:   13 TARQSSPVNSTE--------NDIHIDERELENITNHVEDGTSLPLHSPWTFWLDRSLPGT-TAAECESNLKKIYTVHTVQSFWSVYNNIPPVSCLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKESTLAVWKELLLATIGEQFTDYCASEDEVVGVSVSVREREDVVQVWNGNAS 183          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E2_ARATH (Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 55/169 (32.54%), Postives = 89/169 (52.66%), Query Frame = 2
Query:   98 DSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW---IIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR--FNEDILSVWNRNASDHQAVMAL 589
            D V+     A E  A E +   H L+ K+ FW+  ++   +   ++  +++K   F TVE FW  +  + + S L +  ++HLFK G+ P WED    NGGKW   +   +K    + W + ++AL+G+Q D  D ICG V S+R    +D LS+W R  S+   +M +
Sbjct:    4 DDVNEPLPAAAELPATEAEKQPHKLERKWSFWFDNQS---KKGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEADEICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGI 169          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: I4E3B_XENLA (Eukaryotic translation initiation factor 4E type 3-B OS=Xenopus laevis GN=eif4e3-B PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 50/137 (36.50%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  167 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQL----DYGDNICGAVLSIRFNEDILSVWNRNAS 565
            PL + + FW  R  PG  T    E N+KKI    T++ FW  Y ++   S LP     HL +   +PLWE+ +N  GG W ++  K  S   W++L+LA +G+Q        D + G  +S+R  ED++ VWN NAS
Sbjct:   42 PLNSPWTFWLDRSLPGT-TAAECESNLKKIYTVHTIQSFWSVYNNIPLVSNLPLRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEASSLVWKELLLATIGEQFTDHCSPEDEVIGVSVSVRDREDVVQVWNGNAS 177          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E2_SCHPO (Eukaryotic translation initiation factor 4E-2 OS=Schizosaccharomyces pombe GN=tif452 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 56/165 (33.94%), Postives = 89/165 (53.94%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRR-TPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSG--RFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYS 646
            HPL++++  W+ +  T G+     + D +K+I+ F TVE FW  +  +++ S+LP+ +D   F +GIRP WED  N NGGKW  + K   S     W  +VLA +G+ LD  G  + G V ++R     ++VW RN +D   +  +    K  L +     +EYS
Sbjct:   64 HPLQHEWTLWFLKPPTQGLE----WSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDYSYFLKGIRPEWEDPQNMNGGKWAYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEYS 224          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E3_XENTR (Eukaryotic translation initiation factor 4E type 3 OS=Xenopus tropicalis GN=eif4e3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  167 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLD----YGDNICGAVLSIRFNEDILSVWNRNAS 565
            PL + + FW  R  PG  T    E N+KKI    T++ FW  Y ++ + + LP     HL +   +PLWE+ +N  GG W ++  K  S   W++L+LA +G+Q        D + G  +S+R  ED++ VWN NAS
Sbjct:   42 PLHSPWTFWLDRSLPGT-TAAECESNLKKIYTVHTIQSFWSVYNNIPQVTNLPLRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEASSLVWKELLLATIGEQFTDRCAPEDEVIGVSVSVRDREDVVQVWNGNAS 177          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: I4E3A_XENLA (Eukaryotic translation initiation factor 4E type 3-A OS=Xenopus laevis GN=eif4e3-A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 50/137 (36.50%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  167 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLD----YGDNICGAVLSIRFNEDILSVWNRNAS 565
            PL + + FW  R  PG  T    E N+KKI    T++ FW  Y ++   + LP     HL +   +PLWE+ +N  GG W ++  K  S   W++L+LA +G+Q        D + G  +S+R  EDI+ VWN NAS
Sbjct:   42 PLHSPWTFWLDRSLPGT-TAAECESNLKKIYTVHTIQSFWSVYNNIPLVTNLPVRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEASSLVWKELLLATIGEQFTDRCAPEDEVIGVSVSVRDREDIVQVWNGNAS 177          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E1_CAEEL (Eukaryotic translation initiation factor 4E-1 OS=Caenorhabditis elegans GN=ife-1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  137 QARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK----VVSGRFWEDLVLALVGDQLDYG-DNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHL 613
            +  +  A ++PLK  + +WY           S+ED +KK+  F+TV  FW  Y  +  PS L +  D ++F++ I+P+WE   N NGG+W+I   K     +    W ++++ALVG+Q     ++ICG V ++R     +SVW ++ +D +  M +   +K  L
Sbjct:    3 ETEQTTAPIYPLKRNWTWWYLND----ERNKSWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRDDIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKEKL 162          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E3_MOUSE (Eukaryotic translation initiation factor 4E type 3 OS=Mus musculus GN=Eif4e3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 56/157 (35.67%), Postives = 78/157 (49.68%), Query Frame = 2
Query:  167 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLD----YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPH 625
            PL + + FW  R  PG  T      N+KKI    TV+ FW  Y ++   + LP     HL +   RPLWE+ +N  GG W ++  K  +   W++L+LA +G+Q        D I G  +S+R  ED++ VWN NAS       L    K H  LPH
Sbjct:   31 PLHSPWTFWLDRSLPGA-TAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVSVRDREDVVQVWNVNASLVGEATVLE---KIHQLLPH 183          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_ASHGO (Eukaryotic translation initiation factor 4E OS=Ashbya gossypii GN=TIF45 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 56/176 (31.82%), Postives = 90/176 (51.14%), Query Frame = 2
Query:  107 DNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFK--KVVSGRFWEDLVLALVGDQLDYGD-NICGAVLSIRFNEDILSVWNRN---------ASDHQAVMALRDS 598
            DN  + A    +++     HPL +K+  WYT+  P V    S+ D ++ +  F+TVE FW     + +P  LP  +D HLF+  IRP WED AN  GGKW  +FK         W   +LA++G+ +D  +  I G V+++R +   + +W ++          +  +AV+ L DS
Sbjct:   17 DNEERKAVLTDSKDFDLK-HPLNSKWTLWYTK--PPVGDNESWSDLLRPVTSFTTVEEFWAIQNAIPKPRELPLKSDYHLFRNDIRPEWEDEANSRGGKWSFQFKVRNPPIDDLWLRALLAVIGESIDEDEFEINGVVINVRRSGFKIGLWTKSVRQAPLSKVGAKFKAVLQLDDS 189          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E3_HUMAN (Eukaryotic translation initiation factor 4E type 3 OS=Homo sapiens GN=EIF4E3 PE=2 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  167 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLD----YGDNICGAVLSIRFNEDILSVWNRNAS 565
            PL + + FW  R  PG  T      N+KKI    TV+ FW  Y ++   + LP     HL +   RPLWE+ +N  GG W ++  K  +   W++L+LA +G+Q        D + G  +S+R  ED++ VWN NAS
Sbjct:   48 PLHSSWTFWLDRSLPGA-TAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEVIGVSVSVRDREDVVQVWNVNAS 183          
The following BLAST results are available for this feature:
BLAST of FC875331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E3_DANRE1.019e-2133.33Eukaryotic translation initiation factor 4E type 3... [more]
IF4E2_ARATH2.271e-2132.54Eukaryotic translation initiation factor 4E-2 OS=A... [more]
I4E3B_XENLA1.472e-2036.50Eukaryotic translation initiation factor 4E type 3... [more]
IF4E2_SCHPO1.922e-2033.94Eukaryotic translation initiation factor 4E-2 OS=S... [more]
IF4E3_XENTR2.510e-2035.77Eukaryotic translation initiation factor 4E type 3... [more]
I4E3A_XENLA4.282e-2036.50Eukaryotic translation initiation factor 4E type 3... [more]
IF4E1_CAEEL5.593e-2031.10Eukaryotic translation initiation factor 4E-1 OS=C... [more]
IF4E3_MOUSE9.540e-2035.67Eukaryotic translation initiation factor 4E type 3... [more]
IF4E_ASHGO1.246e-1931.82Eukaryotic translation initiation factor 4E OS=Ash... [more]
IF4E3_HUMAN2.776e-1935.77Eukaryotic translation initiation factor 4E type 3... [more]

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Properties
Property NameValue
Genbank descriptionC31402G05EF CTVClemen1 Citrus clementina cDNA clone C31402G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875331 ID=FC875331; Name=FC875331; organism=Citrus clementina; type=EST; length=687bp
GAAAGAAGAACAAAATTTAAAAAAAGAAAAAGAAAATCAATAAATGGAAA
TAACAGATAAGAAGGAATCCGATATCAATAACACACAAACAGTCGCCGAT
TCCGTCGATAACAATAACAAAGACGCCGAAGAACGCCAAGCTCGTGAACT
TAAAGCCAATTTGCATCCTCTTAAGAACAAGTTTGTCTTTTGGTACACTC
GTCGAACACCCGGAGTTCGAACTCAAACATCGTACGAGGACAACATAAAG
AAAATTGTGGACTTCAGTACTGTTGAAGGTTTTTGGGTCTGCTATTGCCA
CTTGGCTCGTCCTTCTTTGTTGCCAAGCCCTACAGATTTGCATCTTTTCA
AGGAAGGAATTCGCCCATTATGGGAGGACTCTGCAAATTGCAATGGCGGT
AAATGGATAATAAGGTTCAAGAAAGTTGTATCAGGTCGCTTTTGGGAAGA
TCTGGTTCTTGCCTTGGTGGGTGACCAGCTTGACTATGGTGATAACATAT
GTGGTGCAGTCCTAAGCATTCGATTCAATGAAGATATATTGAGTGTGTGG
AACCGCAATGCATCTGATCATCAGGCTGTGATGGCTCTTAGAGATTCTAT
CAAACGGCACTTAAAGCTTCCCCACAGCTATGTTATGGAATACAGCCCCA
TGATGCTTCTCTGCGCGATACTCGTCATACAGAACAC
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