FC875332

Overview
NameFC875332
Unique NameFC875332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.295e-38
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 344
            G DLLNNPDL+A++      +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG+G +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  208 GSDLLNNPDLVASD----ATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.527e-38
Identity = 71/123 (57.72%), Postives = 92/123 (74.80%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDL+AT+     V+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG G ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  210 GVDLLNNPDLVATDP----VISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.625e-37
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 344
            G DLLNNPDL+A +     V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG G +  V +RIGF+  +C  FG+ PG NLDC NQR +
Sbjct:  217 GVDLLNNPDLVAND----AVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDLLAT+      +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQR Y       SM
Sbjct:  203 GVDLLNNPDLLATDP----TISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.176e-37
Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDLL+++      +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  206 GVDLLNNPDLLSSDP----TISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.376e-36
Identity = 69/115 (60.00%), Postives = 86/115 (74.78%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 347
            G++L+NNPDL+AT+      +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  141 GQELVNNPDLVATD----ATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.003e-36
Identity = 68/113 (60.18%), Postives = 86/113 (76.11%), Query Frame = 3
Query:    6 EDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 344
            EDL+NNPDLL+TN      +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+G ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  211 EDLINNPDLLSTNP----TVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.828e-36
Identity = 71/126 (56.35%), Postives = 90/126 (71.43%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 380
            G DLLN PDL+AT+     V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG G +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L+   + +S
Sbjct:  206 GVDLLNKPDLVATDS----VISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.917e-36
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDLL+++      +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  184 GVDLLNNPDLLSSDP----TISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.165e-35
Identity = 71/126 (56.35%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 380
            G DLLN PDL+AT+     V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG G +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  205 GVDLLNKPDLVATDS----VISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
The following BLAST results are available for this feature:
BLAST of FC875332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CHI3_ORYSJ7.295e-3861.40Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_SOLTU9.527e-3857.72Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIB_ARATH1.625e-3762.28Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_THECC4.728e-3759.35Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_GOSHI6.176e-3757.72Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIQ_TOBAC1.376e-3660.00Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIX_PEA4.003e-3660.18Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIT_PHAVU6.828e-3656.35Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_GOSHI8.917e-3656.91Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI5_PHAVU1.165e-3556.35Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31402G06EF CTVClemen1 Citrus clementina cDNA clone C31402G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875332 ID=FC875332; Name=FC875332; organism=Citrus clementina; type=EST; length=666bp
GAGGAGAGGACTTGTTGAACAATCCAGACCTTCTTGCTACTAATGATAAA
GAAGGACGAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGC
ACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAAC
CATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACC
ACAAATATAATCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGC
TGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGA
TTCAGCCTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTT
AATCTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAA
TAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAG
GTGGACAACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACT
GATCCAACATGGATCAATGAGTCTTCTCCATCTTTCATCGTTTGATTATT
TTTTTGAGTTTTTTTGTTAAAATTTTGTACGTTTGTGGTTAGTTATTTTA
ACAAAATAATTAGTCGAGAAAGGTAAATGTTTTGGGGGTGAGAAATACCA
CGATCAGGCACACATG
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