FC875332

Overview
NameFC875332
Unique NameFC875332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.396e-27
Identity = 57/114 (50.00%), Postives = 75/114 (65.79%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 344
            G DLL NPDL+ +++     + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG G    V +RIG++            DNLDC NQ+P+
Sbjct:  101 GVDLLRNPDLVTSDN----TVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.794e-27
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 344
            G D L NP+++A        ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC   G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  181 GFDGLRNPEIVANCSD----IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 55/123 (44.72%), Postives = 79/123 (64.23%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 368
            G DLL NP+L+AT+      ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC  Q P+  ++M+ S
Sbjct:  221 GADLLGNPELVATDP----TVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 55/123 (44.72%), Postives = 78/123 (63.41%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 368
            G DLL NP+L+AT+      ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC  Q P+   +M+ S
Sbjct:  221 GADLLGNPELVATDP----TVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.578e-24
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 344
            G++LL+ P+ +AT+     VLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  194 GQNLLDEPEKVATDP----VLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGND-AVR-NRIGFFTTFCGKFGIQPGDNL 320
            GEDL+ NPDL+    ++  ++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+      +G +D AVR + IGF+  +C   G+  G +L
Sbjct:  258 GEDLIQNPDLV----EKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISR----AFGHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 39/108 (36.11%), Postives = 53/108 (49.07%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 326
            G D L NP+ +AT+       SFK+A+WFWMT                     +V++    G+G TT  ING +EC     D   +RI F+  +C  FG+ PGDNL C
Sbjct:  206 GFDGLGNPEKVATDVNT----SFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 3
Query:   93 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 230
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of FC875332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CHIT_AVESA3.396e-2750.00Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI10_ORYSJ5.794e-2745.61Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ4.152e-2544.72Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI5.423e-2544.72Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_POPTR1.578e-2446.09Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
AGI_URTDI1.385e-1238.89Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIP_BETVU6.875e-1236.11Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_ARAHY1.532e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402G06EF CTVClemen1 Citrus clementina cDNA clone C31402G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875332 ID=FC875332; Name=FC875332; organism=Citrus clementina; type=EST; length=666bp
GAGGAGAGGACTTGTTGAACAATCCAGACCTTCTTGCTACTAATGATAAA
GAAGGACGAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGC
ACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAAC
CATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACC
ACAAATATAATCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGC
TGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGA
TTCAGCCTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTT
AATCTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAA
TAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAG
GTGGACAACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACT
GATCCAACATGGATCAATGAGTCTTCTCCATCTTTCATCGTTTGATTATT
TTTTTGAGTTTTTTTGTTAAAATTTTGTACGTTTGTGGTTAGTTATTTTA
ACAAAATAATTAGTCGAGAAAGGTAAATGTTTTGGGGGTGAGAAATACCA
CGATCAGGCACACATG
back to top