FC875333

Overview
NameFC875333
Unique NameFC875333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 2.572e-90
Identity = 162/199 (81.41%), Postives = 171/199 (85.93%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKDV+WP+                   A+KA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VGISA D+LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAH NYSTKSMRNDGG+EVIKKAI KL  RH EHIAAYGEGNERRLTGKHETAD+NTF WGVA RGASIRVGRDTEK G+
Sbjct:  128 IEQEYTLLQKDVQWPVGWPLGGFPGPQGPYYCGIGANKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAITKLEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 3.359e-90
Identity = 158/199 (79.40%), Postives = 172/199 (86.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD+ WPL                   ADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITE+AG+VLS DPKPI+GDWNGAGAH NYSTKSMR  GG+EVIK+AIEKLG RH EHIAAYGEGNERRLTG+HETADINTFKWGVA RGASIRVGRDTEKEG+
Sbjct:  128 IEQEYTLLQKDLSWPLGWPVGGYPGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEMAGIVLSLDPKPIKGDWNGAGAHTNYSTKSMREAGGYEVIKEAIEKLGRRHREHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.387e-90
Identity = 157/199 (78.89%), Postives = 172/199 (86.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD+ WPL                   ADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEI+GVV+SFDPKPI GDWNGAGAHAN+STKSMR +GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETADIN F WGVA RG+SIRVGRDTEK+G+
Sbjct:  128 IEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEISGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.387e-90
Identity = 159/199 (79.90%), Postives = 169/199 (84.92%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD+KWP+                   ADKA+GRDIVDSHYKACLYAGIN+SG NGEVMPGQWEFQVGP VGI+A DQ+WVARYILERITE+AGVVLS DPKPI GDWNGAGAH NYSTKSMR DGG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETADINTF WGVA RGASIRVGRDTE+ G+
Sbjct:  128 IEQEYTLLQKDIKWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDSHYKACLYAGINVSGTNGEVMPGQWEFQVGPTVGIAAADQVWVARYILERITELAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFLWGVANRGASIRVGRDTEQAGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.387e-90
Identity = 157/199 (78.89%), Postives = 171/199 (85.93%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD+ WPL                   ADK++GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGDQ+WVARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMRNDGG+E+IK AIEKL LRH EHI+AYGEGNERRLTG+HETADINTF WGVA RGAS+RVGR+TE+ G+
Sbjct:  128 IEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 7.483e-90
Identity = 156/199 (78.39%), Postives = 170/199 (85.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            +EQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLY+GINISGINGEVMPGQWEFQVGP+VGISA D+LW AR+I+ERITE AGVVLSFDPKPI+GDWNGAG H NYSTKSMR +GGFEVIKKAIEKL LRH EHI+AYGEGNERRLTG+HETAD+NTF WGVA RGAS+RVGRDTEKEG+
Sbjct:  129 LEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGK 327
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 7.483e-90
Identity = 158/199 (79.40%), Postives = 170/199 (85.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD  WPL                   ADKA+GRDIVD+HYKACLYAG+NISGINGEVMPGQWEFQVGP+VGI+A DQ+WVARYILERITEI GVV+SFDPKPI GDWNGAGAH NYSTK+MR +GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVA RGASIRVGRDTEKEG+
Sbjct:  128 IEQEYTLLQKDTNWPLGWPLGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGIAAADQIWVARYILERITEIYGVVVSFDPKPIPGDWNGAGAHTNYSTKTMREEGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 7.483e-90
Identity = 159/199 (79.90%), Postives = 171/199 (85.93%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            +EQEYTLLQKDV+WPL                   A+KA+GRDIVDSHYKAC+YAGINISGINGEVMPGQWEFQVGP++GISA D+LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAH NYSTKSMRNDGG+EVIKKAI KL  RH EHIAAYGEGNERRLTG+HETAD+NTF WGVA RGASIRVGRDTEK G+
Sbjct:  128 LEQEYTLLQKDVQWPLGWPLGGFPGPQGPYYCGTGANKAFGRDIVDSHYKACIYAGINISGINGEVMPGQWEFQVGPSIGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIAKLEKRHKEHIAAYGEGNERRLTGRHETADMNTFVWGVANRGASIRVGRDTEKAGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 7.483e-90
Identity = 158/199 (79.40%), Postives = 171/199 (85.93%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQK+V WP+                   ADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITE+AGVVLSFDPKPI+GDWNGAGAH NYSTK+MRNDGG+E IK AI+KLG RH EHIAAYGEGNERRLTG+HETADINTF WGVA RGASIRVGRDTEK G+
Sbjct:  128 IEQEYTLLQKEVNWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEEIKSAIQKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGK 326
[Close]
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 9.773e-90
Identity = 155/199 (77.89%), Postives = 172/199 (86.43%), Query Frame = 3 
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKDV WPL                   ADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITE+AG V+SFDPKPI GDWNGAGAH+NYSTKSMR +GG+EVIKKAIEKLGLRH EHIAAYG+GNERRLTG+HETADINTF WGVA RG+S+RVGRDTEK+G+
Sbjct:  128 IEQEYTLLQKDVNWPLGWPLGGYPGPQGPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITELAGAVVSFDPKPIPGDWNGAGAHSNYSTKSMREEGGYEVIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGK 326
The following BLAST results are available for this feature:
BLAST of FC875333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA3_PHAVU2.572e-9081.41Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA5_MAIZE3.359e-9079.40Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA4_PEA4.387e-9078.89Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLN14_ARATH4.387e-9079.90Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLN11_ORYSJ4.387e-9078.89Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA_PINSY7.483e-9078.39Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA_LACSA7.483e-9079.40Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA2_SOYBN7.483e-9079.90Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA1_PHAVU7.483e-9079.40Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA2_PHAVU9.773e-9077.89Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]

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Properties
Property NameValue
Genbank descriptionC31402G07EF CTVClemen1 Citrus clementina cDNA clone C31402G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875333 ID=FC875333; Name=FC875333; organism=Citrus clementina; type=EST; length=634bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACT
GGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCNTA
CCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAGGG
TTACTTTGAGGACAGGAGACTGCTTCTACATGGA
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