FC875333

Overview
NameFC875333
Unique NameFC875333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:514..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 5.019e-86
Identity = 153/199 (76.88%), Postives = 168/199 (84.42%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLL+K+V  P+                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVV+S DPKPI GDWNGAGAH NYSTKSMRN+GGFE+IKKAI KL  +H++HIAAYGEGNERRLTGKHETA I+ F WGVA RGAS+RVGRDTEKEG+
Sbjct:  127 IEQEYTLLKKEVNCPIGCPTGGYPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSLDPKPIPGDWNGAGAHTNYSTKSMRNEGGFEIIKKAIAKLETKHAQHIAAYGEGNERRLTGKHETASIHKFSWGVANRGASVRVGRDTEKEGK 325          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.118e-85
Identity = 150/199 (75.38%), Postives = 168/199 (84.42%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGN+ RLTG+HETADINTF WGVA RGAS+RVGR+TE+ G+
Sbjct:  128 IEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHREHIAAYGEGNDGRLTGRHETADINTFSWGVANRGASVRVGRETEQNGK 326          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 4.249e-85
Identity = 147/199 (73.87%), Postives = 166/199 (83.42%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLL+KDVKWPL                   ADKA+GRDIVD+HYKACLY+G++I G NGEVMPGQWEFQ+ P VGI AGDQLWVARYILERITEI GV++SFDPKPIQGDWNGA AH N+STKSMR DGG ++IK+AI+KL ++H +HIAAYGEGNERRLTGKHETADINTF WGVA RGAS+RVGRDTEKEG+
Sbjct:  128 IEQEYTLLKKDVKWPLGWPLGGFPGPQGPYYCAVGADKAFGRDIVDAHYKACLYSGLSIGGANGEVMPGQWEFQISPTVGIGAGDQLWVARYILERITEICGVIVSFDPKPIQGDWNGAAAHTNFSTKSMRKDGGLDLIKEAIKKLEVKHKQHIAAYGEGNERRLTGKHETADINTFSWGVADRGASVRVGRDTEKEGK 326          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 3.597e-84
Identity = 150/199 (75.38%), Postives = 167/199 (83.92%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGNERRLTG+HETADINTF WGVA RGAS+ VG+ TE+ G+
Sbjct:  128 IEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVAVGQ-TEQNGK 325          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.045e-83
Identity = 148/188 (78.72%), Postives = 160/188 (85.11%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASI 566
            IEQEYTLLQKD+ WP+                   A+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP++GISAGD+LWVARYILERITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG+EVIK+AIEKL  RH+EHIAAYGEGNERRLTG+HETADI+TF WGVA RGASI
Sbjct:  128 IEQEYTLLQKDIHWPIGMALGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSIGISAGDELWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKQAIEKLEKRHNEHIAAYGEGNERRLTGRHETADISTFSWGVANRGASI 315          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 5.194e-83
Identity = 148/199 (74.37%), Postives = 158/199 (79.40%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQ DVKWPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI AYGEGNERRLTGKHETA INTF WGVA RG SIRVGRDTEK G+
Sbjct:  184 IEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGK 382          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 8.860e-83
Identity = 147/199 (73.87%), Postives = 159/199 (79.90%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQ +V WPL                   ADK++GRDI D+HYKACL+AGINISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVLS DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA INTF WGVA RG SIRVGRDTEK G+
Sbjct:  185 IEQEYTLLQTNVNWPLGWPVGGYPGPQGPYYCSAGADKSFGRDISDAHYKACLFAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGK 383          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.511e-82
Identity = 146/199 (73.37%), Postives = 159/199 (79.90%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQ +V WPL                   A+K+WGRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VGI AGD +W ARY+LERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA I+ F WGVA RG SIRVGRDTEK+G+
Sbjct:  184 IEQEYTLLQPNVNWPLGWPVGAYPGPQGPYYCGVGAEKSWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHMEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEKKGK 382          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.511e-82
Identity = 146/199 (73.37%), Postives = 160/199 (80.40%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTL+Q+DV WPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VGI AGD +W ARY+LERITE AGVVL+ DPKPI GDWNGAG H NYSTKSMR +GGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA I++F WGVA RG SIRVGRDTEKEG+
Sbjct:  188 IEQEYTLMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGVVLTLDPKPIDGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVADRGCSIRVGRDTEKEGK 386          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.511e-82
Identity = 146/199 (73.37%), Postives = 159/199 (79.90%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQ++VKWPL                   ADK WGRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VGI AGD +W ARY+LERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR +GGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA I+ F WGVA RG SIRVGRDTE +G+
Sbjct:  186 IEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGK 384          
The following BLAST results are available for this feature:
BLAST of FC875333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA1_DAUCA5.019e-8676.88Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNA3_MAIZE1.118e-8575.38Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLN15_ARATH4.249e-8573.87Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA4_MAIZE3.597e-8475.38Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA3_LUPAN3.045e-8378.72Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLNA2_MEDSA5.194e-8374.37Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA4_PHAVU8.860e-8373.87Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_BRANA1.511e-8273.37Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_DAUCA1.511e-8273.37Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_ARATH1.511e-8273.37Glutamine synthetase, chloroplastic/mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC31402G07EF CTVClemen1 Citrus clementina cDNA clone C31402G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875333 ID=FC875333; Name=FC875333; organism=Citrus clementina; type=EST; length=634bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACT
GGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCNTA
CCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAGGG
TTACTTTGAGGACAGGAGACTGCTTCTACATGGA
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