FC875333

Overview
NameFC875333
Unique NameFC875333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:514..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.182e-81
Identity = 145/199 (72.86%), Postives = 157/199 (78.89%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQ +VKWPL                   ADK++GRDI D+HYKAC+YAGINISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI AYGEGNERRLTGKHETA IN F WGVA RG SIRVGRDTEK G+
Sbjct:  186 IEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVGRDTEKNGK 384          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.850e-81
Identity = 144/199 (72.36%), Postives = 158/199 (79.40%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQKDV WPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VGI AGD +W++RYILERITE AGVVL+ DPKPIQGDWNGAG H NYSTK+MR DGGFE IK+AI  L LRH  HI+AYGEGNERRLTGKHETA I TF WGVA RG SIRVGRDTE +G+
Sbjct:  179 IEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKTMREDGGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTFSWGVANRGCSIRVGRDTEAKGK 377          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.083e-80
Identity = 143/199 (71.86%), Postives = 158/199 (79.40%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLLQ+DV WPL                   +DK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VGI AGD +W++RYILERITE AGVVL+ DPKPIQGDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI+AYGEGNERRLTG HETA I+ F WGVA RG SIRVGRDTE +G+
Sbjct:  184 IEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGK 382          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 1.729e-78
Identity = 140/199 (70.35%), Postives = 155/199 (77.89%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTL+Q+DV WPL                   +DK++GRDI D+HYKACLYAGI ISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DPKPIQGDWNGAG H NYST SMR DGGF+VIKKAI  L LRH  HIAAYGEGNERRLTG HETA I+ F WGVA RG SIRVGRDTE +G+
Sbjct:  190 IEQEYTLMQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGIEISGTNGEVMPGQWEYQVGPSVGIDAGDHIWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTLSMREDGGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDFSWGVANRGCSIRVGRDTEAKGK 388          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 6.178e-60
Identity = 115/198 (58.08%), Postives = 132/198 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            IEQEYTL   D   P                      K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L R+ E  GV +SF PKP+QGDWNGAGAH NYST +MR  GG + I+ AIEKL  RH EHIA YGE NE RLTG+HET  I TF  GVA RGASIRV R    +G
Sbjct:  128 IEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLIRVAEQWGVKVSFHPKPLQGDWNGAGAHTNYSTLAMREPGGMKYIEAAIEKLAKRHDEHIAVYGEDNEMRLTGRHETGHIGTFSSGVANRGASIRVPRHVANKG 324          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.005e-59
Identity = 113/198 (57.07%), Postives = 132/198 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTL   D   P                      K + RD++++HY+ACLY+GINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E   V +SF PKP+QGDWNGAG H NYSTK+MR  GG +VI++AIEKL  RH EHIA YGE N+ RLTG+HET  I  F  GVA RGASIRV R    +G
Sbjct:  128 LEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYSGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWAVKVSFHPKPLQGDWNGAGCHTNYSTKAMREPGGMKVIEEAIEKLSKRHDEHIAVYGEDNDLRLTGRHETGHIGAFSSGVANRGASIRVPRHVAAQG 324          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.230e-59
Identity = 114/201 (56.72%), Postives = 134/201 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            IEQEYTL         WP                    A K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS GDQLW+ARY L R+ E  GV +SF PKP++GDWNGAG H N STK MR  GG + I++AIEKL  RH+EHI  YG  NE+RLTG+HETA + +F  GVA RGASIR+ R   KEG
Sbjct:  130 IEQEYTLFDMYDNVYAWP----KGGYPAPQGPYYCGVGAGKVYARDVIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDQLWMARYFLHRVAEEFGVKISFHPKPLKGDWNGAGCHTNVSTKDMRVPGGMKYIEQAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMTSFSSGVANRGASIRIPRPVAKEG 326          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.922e-59
Identity = 111/201 (55.22%), Postives = 136/201 (67.66%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRN-DGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGR--DTEKEG 596
            IEQEYTLL    KWPL                   A  A GRD+ + HY+ CL AG+NISG+N EV+P QWE+QVGP  GI+ GD +W++RYI+ R+ E+  V +SFDPKPI GDWNG+G H NYSTK+ R    G++VI++   KL  RH+ HIAAYGEGNERRLTGKHET+ ++ F WGVA RG SIRVGR    EK G
Sbjct:  155 IEQEYTLLNAITKWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWEYQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRTAPDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVGRMVPVEKSG 355          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.165e-58
Identity = 108/199 (54.27%), Postives = 134/199 (67.34%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            +EQEYTLL  D  WP                      K + RDIV++HY+ACLYAG+ ISGIN EVMP QWE+QVGP  GI  GD LW++R++L R+ E  GV +SFDPKPI+GDWNGAG H N ST S R +GG + I+  ++KL  RH EHIA YGEGNE RLTG+HET +I+ F +GVA RG SIR+ R   K+G+
Sbjct:  118 LEQEYTLLGPD-GWPYGWPKGGFPGAQGPYYCGVGTGKVYCRDIVEAHYRACLYAGVKISGINAEVMPSQWEYQVGPCHGIEMGDHLWISRFLLHRVAEEFGVKISFDPKPIKGDWNGAGLHTNVSTTSTRAEGGIKAIESYMKKLEARHVEHIAVYGEGNEERLTGRHETGNIDKFSYGVADRGGSIRIPRQVAKDGK 315          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.988e-58
Identity = 110/201 (54.73%), Postives = 133/201 (66.17%), Query Frame = 3
Query:    3 IEQEYTLLQKD---VKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            IEQEYT+  +    V WP                      K + RD+V++HY+ACLY+GINISGIN EVMP QWE+QVGP  GIS  D+LW++RY+L R+ E  G+ +SF PKP+QGDWNGAG H N STKSMR  GG + I+ AIEKL  RH EHIA YGE N+ RLTG+HET  I +F  GVA RG SIR+ R   KEG
Sbjct:  121 IEQEYTMFDESDNPVGWP----KGGFPAPQGPYYCGVGTGKVFARDVVEAHYRACLYSGINISGINAEVMPSQWEYQVGPCEGISMADELWMSRYLLHRVAEEFGIKISFHPKPLQGDWNGAGCHTNVSTKSMREPGGMKHIEAAIEKLAARHKEHIAVYGEDNDMRLTGRHETGSIGSFSSGVANRGCSIRIPRSVAKEG 317          
The following BLAST results are available for this feature:
BLAST of FC875333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_PEA2.182e-8172.86Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_MAIZE2.850e-8172.36Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_ORYSJ1.083e-8071.86Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNA2_HORVU1.729e-7870.35Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA_AMAMU6.178e-6058.08Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_HEBCY4.005e-5957.07Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_CANGA5.230e-5956.72Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA1_CHLRE8.922e-5955.22Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_EMENI1.165e-5854.27Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_YARLI1.988e-5854.73Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]

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Properties
Property NameValue
Genbank descriptionC31402G07EF CTVClemen1 Citrus clementina cDNA clone C31402G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875333 ID=FC875333; Name=FC875333; organism=Citrus clementina; type=EST; length=634bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACT
GGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCNTA
CCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAGGG
TTACTTTGAGGACAGGAGACTGCTTCTACATGGA
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