FC875333

Overview
NameFC875333
Unique NameFC875333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:514..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.390e-58
Identity = 111/198 (56.06%), Postives = 133/198 (67.17%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTL   D + P                      K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E  GV +SF PKP++G+WNGAG H N+STK+MR  GG + I+ AIEKL  RH EHIA YGE N+ RLTG+HET  I+ F  GVA RGASIRV R    +G
Sbjct:  128 LEQEYTLFDADDQ-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGVKVSFHPKPLKGEWNGAGCHTNFSTKAMREAGGMKFIEDAIEKLAKRHDEHIAVYGEDNDLRLTGRHETGHISNFSSGVANRGASIRVPRHVASQG 324          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.428e-58
Identity = 111/198 (56.06%), Postives = 130/198 (65.66%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTL   D   P                      K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E  G+ +SF PKP+ GDWNGAG H NYSTK MR  GG + I +AIEKL  RH+EHIA YGE N+ RLTG+HET  I  F  GVA RGASIRV R    +G
Sbjct:  128 LEQEYTLFDADGT-PFGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGIKVSFHPKPLAGDWNGAGCHTNYSTKVMREPGGMKYIDEAIEKLSKRHAEHIAVYGEDNDLRLTGRHETGHIGDFSSGVANRGASIRVPRHVAAQG 324          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.553e-58
Identity = 103/192 (53.65%), Postives = 131/192 (68.23%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGR 578
            IEQEYTLL    KWPL                   A ++ GRDI + HY+ CL+AGI ISG+NGEV+P QWE+QVGP  GI+ GDQ+W++RY++ R+ E+  V ++FDPKPI GDWNG+G H N+S +   +    +  + + +KLG RH  HIAAYGEGNERRLTGKHET+ +N F WGVA RG SIRVGR
Sbjct:    9 IEQEYTLLNSVTKWPLGWPKGGYPAGQGPYYCSVGAGRSIGRDIPEVHYRCCLHAGIQISGVNGEVLPSQWEYQVGPVEGIAMGDQMWMSRYLMYRVAELFNVEVTFDPKPIPGDWNGSGGHVNFSNRQPESPPAGKQSRSSAKKLGKRHRWHIAAYGEGNERRLTGKHETSSMNDFSWGVANRGCSIRVGR 200          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.683e-57
Identity = 110/201 (54.73%), Postives = 134/201 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTL  +  +   WP                    A K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GI+  DQLW+ARY L R+ E  GV +S  PKP++GDWNGAG H N STK MR  GG + I+ AIEKL  RH+EHI  YG  NE+RLTG+HETA ++TF  GVA RGASIR+ R   KEG
Sbjct:  132 LEQEYTLFDQYDQVYGWP----KGGFPAPQGPYYCGVGAGKVFARDVIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGIAMADQLWIARYFLHRVAEEFGVKVSLHPKPLKGDWNGAGCHTNVSTKLMRAPGGMKYIEDAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMSTFSSGVANRGASIRIPRSVNKEG 328          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.197e-57
Identity = 111/198 (56.06%), Postives = 133/198 (67.17%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTLL    + P                      K   RDIVD+HYKACLY+G+ ISG N EVMP QWEFQVGP VGI  GD LW+AR++L RI E  G  +S DPKPI GDWNGAG H+N+STK MR +GG + I+ AI+KL  RH EHIA YGEGNE+RLTG+HET  I+ F +GVA RGASIR+ R+   +G
Sbjct:  132 LEQEYTLLDLSNR-PFGWPANGFPAPQGPYYCGVGTGKVVQRDIVDAHYKACLYSGVKISGTNAEVMPAQWEFQVGPCVGIEMGDHLWLARFLLARIAEEFGAKVSVDPKPIPGDWNGAGLHSNFSTKEMRVEGGMKHIEAAIKKLEGRHKEHIAVYGEGNEKRLTGRHETGAIDQFSYGVANRGASIRIPREYTAKG 328          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.197e-57
Identity = 109/201 (54.23%), Postives = 131/201 (65.17%), Query Frame = 3
Query:    3 IEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTL   +     WP                    A K + RD+V++HY+ACLYAG+ ISGIN EVMP QWEFQVGP  GI+ GD+LWV RY+L R+ E  GV +SF PKP++GDWNGAG H N ST+ MR  GG   I++AI+KL  RH EHI  YG  NE RLTG+HETA + TF  GVA RGASIR+ R   KEG
Sbjct:  129 LEQEYTLFDHNDNVYGWP----KGGFPAPQGPYYCGVGAGKVYARDVVEAHYRACLYAGLRISGINAEVMPSQWEFQVGPCTGITMGDELWVGRYLLHRVAEEFGVKVSFHPKPLKGDWNGAGCHTNVSTREMRQPGGMRYIEEAIDKLSKRHKEHIKLYGSDNELRLTGRHETASMATFSSGVANRGASIRIPRSVSKEG 325          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.870e-57
Identity = 107/198 (54.04%), Postives = 135/198 (68.18%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTLL  + + P                      K   RDIV++HYK CLYAG+ ISG N EVMP QWEFQVGP  GI  GD LW+AR++L R++E  G  +SFDPKPI GDWNGAG H N+ST++MR +GG + I+ AI+KL  RH EHIA YGEGN++RLTG+HET  I++F +GVA RGASIR+ R+   +G
Sbjct:  134 LEQEYTLLDINDR-PYGWPRNGFPAPQGPYYCGVGTGKVVQRDIVEAHYKCCLYAGVKISGTNAEVMPAQWEFQVGPCDGIEMGDHLWLARFLLHRVSEEFGAKVSFDPKPIPGDWNGAGLHTNFSTENMRKEGGMKYIEDAIKKLEARHKEHIAVYGEGNDKRLTGRHETGSIDSFTYGVANRGASIRIPRECGAKG 330          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.870e-57
Identity = 115/204 (56.37%), Postives = 137/204 (67.16%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDT--EKEG 596
            +EQEYTLL  D   P                    ADKA+GRDIV++HY+ACLYAG+ I G N EVMP QWEFQVGP  GI  GD LW+AR+IL R+ E  GV++SFDPKPI G+WNGAG H N+STK+MR DGG + I++AIEKL  RH  HI AY    G  N RRLTG HET+ I+ F  GVA RGASIR+ R+   EK+G
Sbjct:  133 MEQEYTLLGTDGH-PFGWPSNCFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKIGGTNAEVMPAQWEFQVGPCEGIEMGDHLWIARFILHRVCEDFGVIVSFDPKPIPGNWNGAGCHTNFSTKNMREDGGLKHIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSSIHEFSAGVANRGASIRIPRNVGHEKKG 335          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.748e-57
Identity = 107/202 (52.97%), Postives = 136/202 (67.33%), Query Frame = 3
Query:    3 IEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            +EQEYTL         WP                      K + RDIV++HYKACL+AGI ISGIN EV+P QWEFQVGP VGI  GD LW++RY+L R+ E  GV +SF PKPI GDWNG+G H N ST++MR++GG + I++AI+KL  RH+EHIA YG+ N  RLTG+HET +I+ F +GVA RG+SIR+ R   KEG+
Sbjct:  132 LEQEYTLFDLYGNPYGWP----KGGFPGPQGPYYCGVGTGKVYCRDIVEAHYKACLFAGIKISGINAEVLPSQWEFQVGPCVGIEMGDHLWISRYLLHRVAEEFGVKISFHPKPIPGDWNGSGLHTNVSTQAMRDEGGMKAIEEAIQKLSTRHAEHIAVYGDDNTLRLTGRHETGNIDAFSYGVADRGSSIRIPRSCAKEGK 329          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.748e-57
Identity = 110/198 (55.56%), Postives = 134/198 (67.68%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP +GI  GDQLWV+R+ L RITE  G  +S  PKPI GDWNGAG H+N+STK+MR +GG +VI++A++KL   H+E IA YGE NE RLTG+HET  I++F WGVA RG SIR  R+T  +G
Sbjct:  132 LEQEYTLLGPDNR-PYGWPTGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCLGIEMGDQLWVSRFFLARITEEFGAKVSLHPKPIAGDWNGAGLHSNFSTKAMREEGGMKVIEEALKKLEPHHAECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRAPRETAAKG 328          
The following BLAST results are available for this feature:
BLAST of FC875333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_AGABI3.390e-5856.06Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_SUIBO4.428e-5856.06Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_DUNSA7.553e-5853.65Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA_KLULA1.683e-5754.73Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_COLGL2.197e-5756.06Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_ASHGO2.197e-5754.23Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_NEUCR2.870e-5754.04Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_CHICK2.870e-5756.37Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_TUBBO3.748e-5752.97Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA_FUSSH3.748e-5755.56Glutamine synthetase OS=Fusarium solani subsp. pha... [more]

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Properties
Property NameValue
Genbank descriptionC31402G07EF CTVClemen1 Citrus clementina cDNA clone C31402G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875333 ID=FC875333; Name=FC875333; organism=Citrus clementina; type=EST; length=634bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACT
GGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCNTA
CCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAGGG
TTACTTTGAGGACAGGAGACTGCTTCTACATGGA
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