FC875333

Overview
NameFC875333
Unique NameFC875333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:514..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 215.698 bits (548), Expect = 5.810e-56
Identity = 109/201 (54.23%), Postives = 134/201 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            +EQEYTL+  D   P                    AD+A+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GIS GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVA R ASIR+ R   +E
Sbjct:  133 MEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQE 332          

HSP 2 Score: 23.483 bits (49), Expect = 5.810e-56
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  587 ERRKGYFEDRR 619
            + +KGYFEDRR
Sbjct:  331 QEKKGYFEDRR 341          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.575e-55
Identity = 106/201 (52.74%), Postives = 129/201 (64.18%), Query Frame = 3
Query:    3 IEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            IEQEYT+L    +   WP                      + + RDIV++HYKACLYAGINISGIN EVMP QWE+QVGP  GI  GDQLW++R++L RI E  GV +SF PKPI GDWNGAG H N STK  R +GG + I+  +EK   RH EHIA YG+ N+ RLTG+HET  I+ F +GVA RGAS+R+ R     G
Sbjct:  134 IEQEYTMLDYYDRPFGWP----KGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVYGDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNG 330          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 2.852e-55
Identity = 111/204 (54.41%), Postives = 134/204 (65.69%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGR--DTEKEG 596
            +EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G   I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F  GVA R ASIR+ R    EK+G
Sbjct:  133 MEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLRCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRIVGQEKKG 335          

HSP 2 Score: 23.483 bits (49), Expect = 2.852e-55
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  587 ERRKGYFEDRR 619
            + +KGYFEDRR
Sbjct:  331 QEKKGYFEDRR 341          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.582e-55
Identity = 102/198 (51.52%), Postives = 131/198 (66.16%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTL  +    P                      K + RD++++HY+ACL+AG++ISGIN EVMP QWEFQVGP  GI  GD+LW+ARY+L+R+ E  GV +SF PKP++G+WNGAG H N STKSMR  GG + I+ A+ KL  RH EH+  YG  N++RLTG+HETA I  F  GVA RGAS+R+ R   KEG
Sbjct:  129 LEQEYTLFDQ-FDQPYAWPKGGFPAPQGPYYCGVGTGKVYARDLIEAHYRACLHAGVDISGINAEVMPSQWEFQVGPCEGIQMGDELWIARYLLQRVAEEFGVKVSFHPKPLKGEWNGAGCHTNVSTKSMRLPGGMKSIEVALSKLAKRHKEHMLLYGADNDQRLTGRHETASIEGFSSGVANRGASVRIPRSVAKEG 325          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.816e-55
Identity = 107/198 (54.04%), Postives = 132/198 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP  GI+ GDQLW++R+ L R+ E  G  +S  PKPI GDWNG G H+N+STK+MR +GG +VI++A++KL   H E IA YGE NE RLTG+HET  I++F WGVA RG SIRV R+T  +G
Sbjct:  130 LEQEYTLLGSDNR-PYGWPAGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCTGIAMGDQLWISRFFLHRVAEEFGAKVSLHPKPIAGDWNG-GLHSNFSTKAMREEGGMKVIEEALKKLEPHHVECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRVPRETAAKG 325          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 7.816e-55
Identity = 109/203 (53.69%), Postives = 134/203 (66.01%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYTLL  D + P                    AD+ + RD+V++H  ACLYAGI+ +G N EVMP QWEFQ+GPA GI A D LWV+RYIL+RI E  GVV++FDPKP++G WNGAGAH N+STK MR DGG + I++AIEKL  RH  HI AY    G+ NERRL G+ ET+ I+ F WGVA R  S+RV R     G+
Sbjct:  170 IEQEYTLLDVDGR-PFGWPENGFPAPQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPA-GIKACDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRADGGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSWGVANRAVSVRVPRGVATAGK 370          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.274e-54
Identity = 109/202 (53.96%), Postives = 130/202 (64.36%), Query Frame = 3
Query:    3 IEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDG-GFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEYTL   D +   WP                    A K + RD +++HY+ACLYAGI ISGIN EVMP QWEFQVGP  GI  GD LW+AR++L RI E  G+  S  PKP++GDWNGAG H+NYSTK MR  G G   I+ AI+KL  +H EHIA YGE N+ RLTGKHETA + TF  GVA RGASIR+ R    +G
Sbjct:  131 LEQEYTLFDADGQVFGWP----KNGFPGPQGPYYCGVGAGKVFARDFIEAHYRACLYAGIKISGINAEVMPSQWEFQVGPCTGIEMGDHLWMARFLLLRIGEEWGITPSLHPKPLKGDWNGAGCHSNYSTKDMRTPGKGMAAIEDAIKKLEKKHLEHIAVYGEDNDLRLTGKHETASMTTFSAGVANRGASIRIPRHVGAQG 328          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.554e-53
Identity = 106/201 (52.74%), Postives = 133/201 (66.17%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            +EQEYTLL  D K PL                   A++ +GRD+V++HY+ACL AGINISG N +VMP QWEFQVGP  GI+ GD LW+ARY+L R+ E   VV++ DPKPI GDWNGAG H N+ST++MR   G   I+ AI+KL   H +HI AY    G+ NERRLTG +ET+ I+ F  GVA RGASIR+ R   +E
Sbjct:  130 MEQEYTLLDID-KHPLGWPKNGYPGPQGPYYCGVGANRVYGRDVVEAHYRACLCAGINISGENAKVMPAQWEFQVGPCEGITMGDDLWMARYLLHRVAEDFDVVVTLDPKPIPGDWNGAGMHTNFSTEAMRGPNGILEIESAIDKLSKVHEKHIKAYDPHAGKDNERRLTGHYETSSIHDFSAGVANRGASIRIPRGVAEE 329          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.992e-50
Identity = 97/198 (48.99%), Postives = 127/198 (64.14%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEG 596
            +EQEY + +KD   P+                   +  A+GR I D H +ACLYAGI ISG N EV PGQ EFQ+GP  GI A DQLW+AR+ILE+I+E     + + PKP+QGDWNG+G H N+ST+SMR++GG  VI +A++KL  +HSEH+  YG  N+ RLTG HETA I+ F  G+  R  S+R+  DT K G
Sbjct:  129 LEQEYFIFRKDTNQPIGMEYASKQGQYYCSVG---SQNAYGRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGPVEGIDAADQLWIARFILEKISEHYDRYIVYHPKPLQGDWNGSGCHTNFSTESMRSEGGLTVIMEAVDKLRTKHSEHMKVYGIDNDLRLTGDHETASIDEFSHGIGSRQCSVRIPNDTVKNG 323          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.602e-50
Identity = 97/190 (51.05%), Postives = 129/190 (67.89%), Query Frame = 3
Query:    6 EQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ-GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRV 572
            EQEYT+L K                         A+ A+GR + ++H +AC+ AG+ ISGIN EVMPGQWE+Q+GP   ++ GD++ ++R++L R+ E  G+V +F+PKP++ GDWNG GAH N+STK MR  GG +VI++A+EKL   H EHI  YG GNE RLTGKHET DINTFK GVA RG+SIR+
Sbjct:  154 EQEYTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTNFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVADRGSSIRI 343          
The following BLAST results are available for this feature:
BLAST of FC875333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_HUMAN5.810e-5654.23Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_SCHPO1.575e-5552.74Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_RAT2.852e-5554.41Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_DEBHA4.582e-5551.52Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA_GIBFU7.816e-5554.04Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA1_DROME7.816e-5553.69Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_CRYNE2.274e-5453.96Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_PANAR9.554e-5352.74Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA_MIMIV1.992e-5048.99Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA2_CHLRE2.602e-5051.05Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]

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Properties
Property NameValue
Genbank descriptionC31402G07EF CTVClemen1 Citrus clementina cDNA clone C31402G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875333 ID=FC875333; Name=FC875333; organism=Citrus clementina; type=EST; length=634bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACT
GGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCNTA
CCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAGGG
TTACTTTGAGGACAGGAGACTGCTTCTACATGGA
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