FC875333

Overview
NameFC875333
Unique NameFC875333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:514..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 196.438 bits (498), Expect = 9.887e-50
Identity = 103/201 (51.24%), Postives = 128/201 (63.68%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            +EQEYTLL  D   P                    ADKA+ RDI+++HY+ACLYAG+ I+G   EV   QWEFQ+GP  GI  GD LWVAR+IL R+ +  GV+ +FD KPI G+WNGAG H N+STK+MR + G + IK+AIEKL  RH  HI AY    G  N RRLTG H+T++IN F  GVA R ASIR+ R   +E
Sbjct:  133 MEQEYTLLGTDGH-PFGWPSDGFPGPQGLYYCGVGADKAYRRDIMEAHYRACLYAGVKITGTYAEVKHAQWEFQIGPCEGIRMGDHLWVARFILHRVCKDFGVIATFDSKPIPGNWNGAGCHTNFSTKTMREENGLKHIKEAIEKLSKRHRYHIRAYDPKGGLDNARRLTGFHKTSNINDFSAGVADRSASIRIPRTVGQE 332          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.428e-48
Identity = 98/203 (48.28%), Postives = 125/203 (61.58%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKP--IQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            +EQEY ++ +D + PL                   AD+A+GR++V++HY+ACL+AG+NI G N EV PGQWEFQ+G   GI  GDQLW++RYIL R+ E  GV +S DPKP    GDWNGAG H N+ST  MR  GG   I+ A+  L   H E +  Y    GE N RRLTG+HET+  + F WGVA RG SIR+ R    E
Sbjct:  137 MEQEYLIVDRD-EHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVYDPHGGEDNLRRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAE 338          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.520e-45
Identity = 95/201 (47.26%), Postives = 123/201 (61.19%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL--GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKEGR 599
            IEQEYT  Q    +PL                   AD+ +GRD+V++H   CL AG+ ISGIN EVMPGQWEFQVGP   +   D LWVAR++L R  E   V  + DPKP++GDWNGAGAH N+STK+MR    ++ I  A E L  G +  +H+  YG G + RLTG HETA  N + +GV+ RGAS+R+    EK+G+
Sbjct:  112 IEQEYTFFQDG--YPLGFPKGGFPAPQGGYYCGVGADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGPVSPLEVSDHLWVARWLLYRTAEDFDVAATLDPKPVKGDWNGAGAHTNFSTKAMRE--SYDAIITAAESLGEGSKPLDHVKNYGAGIDDRLTGLHETAPWNEYSYGVSDRGASVRIPWQVEKDGK 308          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.294e-41
Identity = 92/198 (46.46%), Postives = 114/198 (57.58%), Query Frame = 3
Query:    3 IEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEK 590
            IEQEYT  +  +   WP                      K  GR IV+ H +ACL AG+ I G N EVM GQWEFQ+G     + GDQ+W+ R++L RI E  GV +SF  KPI GDWNGAGAH N+STK      G++ I    E LG R +EH+  YG+G E RLTGKHETA  N + WG + RGAS+R+    EK
Sbjct:  107 IEQEYTFFKDGRPYGWP----EVGYPAPQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAGAHTNFSTKQTME--GWDAIVTCCEALGTRVTEHVTHYGKGIEDRLTGKHETAPWNKYSWGASDRGASVRIPWAVEK 298          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 93/200 (46.50%), Postives = 118/200 (59.00%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXX-ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGL--RHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRVGRDTEKE 593
            IEQEYT L+ D   PL                    AD  +GR+IV+ H   CL AG+ +SGIN EVMPGQWEFQVG    +   D +WVAR++L R+ E  GV  S D KP +GDWNGAGAH N+ST++MR   G++ I  A E LG   +  EH+  YG G E RLTG HETA  + + +G + RGAS+R+    E E
Sbjct:  108 IEQEYTFLKGDR--PLGFPEGGGYPAPQADYYCGVGADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAGAHTNFSTRAMRE--GYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETAPWDAYSYGASDRGASVRIPWQVEVE 303          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.138e-36
Identity = 76/150 (50.67%), Postives = 97/150 (64.67%), Query Frame = 3
Query:  126 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRV 572
            R+IV+ H   CL AGIN  GIN EV  GQWEFQ+       A DQ+W+ARY+L+R+TE  G+ + +  KP+   DWNG+G H N+STK +R  GG E  +  +        +HIA YG  N++RLTGKHETA  N F +GVA RGASIRV
Sbjct:  146 REIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSGMHCNFSTKYLREVGGKEYFEALMASSDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRV 295          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.061e-35
Identity = 76/150 (50.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:  126 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRV 572
            R IV+ H   CL AGIN  GIN EV  GQWEFQ+       A D++W+ARY++ R+TE  G+ + F  KP+   DWNG+G HAN+ST+ MR  GG E  +  +        +HIA YG  N++RLTGKHETA  N F +GVA RGASIRV
Sbjct:  149 RKIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEMWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSGMHANFSTEYMRTVGGKEYFEALMAAFDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRV 298          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.447e-32
Identity = 78/153 (50.98%), Postives = 94/153 (61.44%), Query Frame = 3
Query:  126 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGG---FEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYRGASIRV 572
            R IV+ H   CL AGIN  GIN EV  GQWEFQ+       A D++ VARY+L R+TE  G+ + F  KP+   DWNG+G HAN+ST  +R  GG   FE +  A EK      +HI  YG  N  RLTGKHETA  + F +GVA RGASIRV
Sbjct:  149 RQIVEEHLDICLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEVCVARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSGMHANFSTAYLREVGGQDYFEALMAAFEK---NLHDHINVYGPDNHLRLTGKHETAPWDKFSYGVADRGASIRV 298          
BLAST of FC875333 vs. ExPASy Swiss-Prot
Match: GLNA_VITSX (Glutamine synthetase (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 37/54 (68.52%), Postives = 38/54 (70.37%), Query Frame = 3
Query:  393 RNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVAYR 554
            +NDGGFEVIKK        H EHIAAYGEGNER     HETADINTF WGVA R
Sbjct:   11 KNDGGFEVIKK--------HKEHIAAYGEGNER-----HETADINTFLWGVANR 51          
The following BLAST results are available for this feature:
BLAST of FC875333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_CRIGR9.887e-5051.24Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA_CAEEL1.428e-4848.28Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA2_STRVR2.520e-4547.26Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_FRAAL1.294e-4146.46Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_STRHY2.883e-4146.50Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_RHILP2.138e-3650.67Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_BRAJA1.061e-3550.67Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHIME2.447e-3250.98Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]
GLNA_VITSX1.823e-1168.52Glutamine synthetase (Fragments) OS=Vitis sp. PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC31402G07EF CTVClemen1 Citrus clementina cDNA clone C31402G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875333 ID=FC875333; Name=FC875333; organism=Citrus clementina; type=EST; length=634bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACT
GGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCNTA
CCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAGGG
TTACTTTGAGGACAGGAGACTGCTTCTACATGGA
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