FC875336

Overview
NameFC875336
Unique NameFC875336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 60/195 (30.77%), Postives = 97/195 (49.74%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPTHFAQAL 666
            R +GKV ++T +  GIG         EGA+V+     ++N+D  V++ + L  +V   + +V++    K +++K V+KYGRIDV V NA +   A  L++ KE   D +  +N+K    + Q   P+M  Q+  S+V +SS+ G         Y                E+A  + RVN VAPGF+ T   + L
Sbjct:    2 RLEGKVCLITGAASGIGKATTLLFAQEGATVIAGDISKENLDSLVKEAEGLPGKVDPYVLNVTDRDQIKEVVEKVVQKYGRIDVLVNNAGITRDAL-LVRMKEEDWDAVINVNLKGVFNVTQMVVPYMIKQRNGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWAKELAGRNIRVNAVAPGFIETPMTEKL 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHK2_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 2 OS=Streptomyces violaceoruber GN=gra-orf6 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 67/193 (34.72%), Postives = 95/193 (49.22%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVN---PYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGS--SVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPGFVPTHFAQ 660
            +  VA+VT S+ GIG  VA+RL  EG  VV++S +  +V+   EK  A   + + +   VS E   + L+D  VE YGR+DV V NA      P+A DL      V  ++  +NV  +      A PH+ +    SVV +SSIAG +P  +   Y V               + P  RVN VAPG + T + Q
Sbjct:    7 EAPVALVTGSSSGIGQTVAQRLAAEGYRVVVNSAR--SVEDG-EKTAAALPDALYVRADVSEEADARRLVDTAVEHYGRLDVLVNNAGRTRAIPHA-DLAAATPEVWREILGLNVIGTWQTTVAAMPHLARSGNGSVVNVSSIAGSRPAGSSIPYAVSNGGHRAQTRLLANTVGPAVRVNAVAPGLIETPWTQ 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase ykvO OS=Bacillus subtilis GN=ykvO PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 60/197 (30.46%), Postives = 99/197 (50.25%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDA-APHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEM-APDTRVNCVAPGFVPTHFAQALLGN 675
            +F+GK+A+VT  T GIGL  A++   EGA V I+ R+Q  +DKAV +   +G  V G+   +S  +    L D   ++ G++D+   NA +  +   L +  E  +D+ ++INVK +I  +Q A +    K  S++   S AG     A ++YG               ++   + RVN V+PG + T     L G+
Sbjct:    3 KFEGKIALVTGGTSGIGLATAQKFVNEGAYVYITGRRQNELDKAVNQ---IGKNVTGVQGDISKLEDLDKLYDIIKQEKGKLDILFANAGIGNF-LPLGEITEEQVDRTFDINVKGTIFTVQKALSLFPDKVGSIIVTGSTAGSIGNPAFSVYGASKAALRALVRNWILDLKGTEIRVNVVSPGGILTPAYDELFGD 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 63/207 (30.43%), Postives = 98/207 (47.34%), Query Frame = 1
Query:   85 AKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKAL-------GIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQALLGNDA 681
            + +  GKVA+VT    GIG  V     LEGASV  +  K +    A E L+ L         E I I   +  E++ K ++++ V  +GRIDV V N A   +   +    E+ L++++  N+ S   L++ A  HM++GSS++  +S+  Y   S++  Y                ++AP   RVN VAPG V T    A    +A
Sbjct:   34 SNKLHGKVALVTGGDSGIGKAVCHCYALEGASVAFTYVKGREDKDAEETLRLLHEVKTREAKEPIMIATDLGFEENCKRVVEEVVNSFGRIDVLV-NCAAEQHEVSIEDIDEARLERVFRTNIFSQFFLVKYALKHMKEGSSIINTTSVVAYAGNSSLLEYTATKGAIVSFTRGLALQLAPKGIRVNGVAPGPVWTPLIPASFSEEA 239          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 59/184 (32.07%), Postives = 88/184 (47.83%), Query Frame = 1
Query:   94 FQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPG 636
            FQGKV ++T +  GIG   A      GA V I+   ++   + VE +K++G E   I   V+ +   + ++ KTVE +GR+D+ V NA + PY  ++ +T E   DK   +NVK   LL + A   M+K  G  +V +SS AG        +Y V              +      RVN V PG
Sbjct:    3 FQGKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGEAAFIFGDVAKD--AEQIVKKTVETFGRLDILVNNAGIVPY-GNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPG 183          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: BPHB_COMTE (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Comamonas testosteroni GN=bphB PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 57/195 (29.23%), Postives = 95/195 (48.72%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKAL----GIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYA---ADLLKTK-ESVLDKLWEINVKSSILLMQDAAPHM-QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPGFVPT 648
            +  G+VA++T    G+G  + +R   EGA V +       +DK+ E+L+ L    G   +G++  V + Q +K   ++ +  +G+ID  + NA +  Y+   ADL + K ++  D ++ +NVK  I  ++   P +     SVVF  S AG+ P     +Y                E+AP  RVN VAPG + T
Sbjct:    2 KLTGEVALITGGASGLGRALVDRFVAEGARVAV-------LDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNT 189          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 55/210 (26.19%), Postives = 104/210 (49.52%), Query Frame = 1
Query:   85 AKRFQGKVAVVTASTQGIGLGVAERLGLEGASVV---ISSRKQKNVDKAVEKLKALGI----EVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPG-----FVPTHFAQALLGN 675
            + + +GKVA++T    GIG  V      EGA+V    +  +++K+  + ++ LK +      E I I   +  +++ K ++D+ V  +GRIDV + NAA    ++ + +  E  L++++  N+ S   L + A  HM++GSS++  +S+  Y+  +++  Y                ++A    RVN VAPG      +P  F +  + N
Sbjct:   32 SNKLRGKVALITGGDSGIGRAVGYCFASEGATVAFTYVKGQEEKDAQETLQMLKEVKTSDSKEPIAIPTDLGFDENCKRVVDEVVNAFGRIDVLINNAAEQYESSTIEEIDEPRLERVFRTNIFSYFFLTRHALKHMKEGSSIINTTSVNAYKGNASLLDYTATKGAIVAFTRGLALQLAEKGIRVNGVAPGPIWTPLIPASFNEEKIKN 241          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: YHDF_BACSU (Uncharacterized oxidoreductase yhdF OS=Bacillus subtilis GN=yhdF PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 47/184 (25.54%), Postives = 89/184 (48.37%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASV-VISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPG 636
            + +GKVA++T    GIG   A     EGA + ++   +  + ++  ++++   +  + I   V +E H +  + +TV+ +G++D+ V NAA       +L      L+K +  N+ S   + + A PH+Q+G +++  +SI  Y+  +A+  Y                 +A    RVN VAPG
Sbjct:   42 KLKGKVAIITGGDSGIGRAAAIAFAKEGADISILYLDEHSDAEETRKRIEKENVRCLLIPGDVGDENHCEQAVQQTVDHFGKLDILVNNAAEQHPQDSILNISTEQLEKTFRTNIFSMFHMTKKALPHLQEGCAIINTTSITAYEGDTALIDYSSTKGAIVSFTRSMAKSLADKGIRVNAVAPG 225          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: TODD_PSEP1 (Cis-toluene dihydrodiol dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=todD PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 55/191 (28.80%), Postives = 90/191 (47.12%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKAL----GIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVL----DKLWEINVKSSILLMQDAAPHM-QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPG 636
            R +G+VA+VT    G+G  + +R   EGA V +       +DK+   L+AL    G  ++G+   V +    +  + + VE +G++D  V NA V  Y   L+   + ++    ++++E+NVK  IL  + A P + Q   S +F  S AG+ P     +Y                E  P  RVN +APG
Sbjct:    2 RLEGEVALVTGGGAGLGRAIVDRYVAEGARVAV-------LDKSAAGLEALRKLHGDAIVGVEGDVRSLDSHREAVARCVEAFGKLDCLVGNAGVWDYLTQLVDIPDDLISEAFEEMFEVNVKGYILAAKAALPALYQSKGSAIFTVSNAGFYPGGGGVLYTAGKHAVIGLIKQLAHEWGPRIRVNGIAPG 185          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 57/192 (29.69%), Postives = 94/192 (48.96%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAV-EKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            K A+VT +++GIG  +A +L  EG +V ++    K+  +AV E++KA G+E   I  +V+     K +I + V ++G +DV V NA +      L++ KE   D + + N+K     +Q   P M  Q+  +++ ++SI G       A Y                E+A     VN VAPGF+ +    AL
Sbjct:    3 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNL-LMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNAL 193          
The following BLAST results are available for this feature:
BLAST of FC875336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FABG_THEMA3.593e-1930.773-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
DHK2_STRVN3.363e-1734.72Granaticin polyketide synthase putative ketoacyl r... [more]
YKVO_BACSU9.786e-1730.46Uncharacterized oxidoreductase ykvO OS=Bacillus su... [more]
GRDH2_ARATH9.786e-1730.43Glucose and ribitol dehydrogenase homolog 2 OS=Ara... [more]
Y325_THEMA1.846e-1532.07Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
BPHB_COMTE3.148e-1529.23Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
GRDH1_ARATH9.159e-1526.19Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]
YHDF_BACSU1.562e-1425.54Uncharacterized oxidoreductase yhdF OS=Bacillus su... [more]
TODD_PSEP12.041e-1428.80Cis-toluene dihydrodiol dehydrogenase OS=Pseudomon... [more]
FABG_STAES2.041e-1429.693-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402G10EF CTVClemen1 Citrus clementina cDNA clone C31402G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875336 ID=FC875336; Name=FC875336; organism=Citrus clementina; type=EST; length=683bp
GATCTAAGGGTTATTCAGAACTGAAAATCCTCATCACCAAAAACAGTAAT
TCATTGGCTTATCCAAATGGAGAAGGTGAACATGGCAAAAAGATTCCAAG
GGAAGGTTGCGGTCGTGACGGCTTCGACTCAAGGCATTGGCTTAGGCGTC
GCTGAAAGACTCGGTTTGGAAGGCGCCTCTGTTGTTATCTCCTCTAGAAA
GCAGAAAAATGTGGACAAAGCAGTTGAGAAACTCAAAGCTCTAGGAATCG
AGGTTATTGGAATTATTTGTCATGTATCAAACGAACAACATAGGAAGAAT
CTCATAGACAAAACTGTTGAGAAATATGGAAGAATAGATGTGTTTGTTTT
AAATGCTGCTGTCAATCCCTATGCTGCTGATCTTCTGAAAACCAAAGAAT
CTGTACTGGACAAGTTATGGGAAATCAATGTCAAATCCAGTATACTTCTT
ATGCAGGATGCTGCACCTCACATGCAGAAGGGTTCTTCAGTCGTTTTCAT
TTCCTCCATAGCTGGTTATCAACCACCGTCAGCCATGGCTATGTATGGAG
TGACTAAGACAGCCCTGTTAGGTTTGACTAAGGCCCTCGCGGCTGAGATG
GCCCCAGATACTCGTGTGAATTGTGTTGCTCCTGGTTTTGTGCCGACACA
CTTTGCTCAGGCCCTTCTAGGCAATGATGCTGT
back to top