FC875336

Overview
NameFC875336
Unique NameFC875336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_STAEQ (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fabG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 57/192 (29.69%), Postives = 94/192 (48.96%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAV-EKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            K A+VT +++GIG  +A +L  EG +V ++    K+  +AV E++KA G+E   I  +V+     K +I + V ++G +DV V NA +      L++ KE   D + + N+K     +Q   P M  Q+  +++ ++SI G       A Y                E+A     VN VAPGF+ +    AL
Sbjct:    3 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNL-LMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNAL 193          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: BNZE_PSEPU (Cis-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Pseudomonas putida GN=bnzE PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 55/191 (28.80%), Postives = 90/191 (47.12%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKAL----GIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVL----DKLWEINVKSSILLMQDAAPHM-QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPG 636
            R +G+VA+VT    G+G  + +R   EGA V +       +DK+   L+AL    G  ++G+   V +    +  + + VE +G++D  V NA V  Y   L+   + ++    ++++E+NVK  IL  + A P + Q   S +F  S AG+ P     +Y                E  P  RVN +APG
Sbjct:    2 RLEGEVALVTGGGAGLGRAIVDRYVAEGARVAV-------LDKSAAGLEALRKLHGDAIVGVEGDVRSLDSHREAVARCVEAFGKLDCLVGNAGVWDYLTQLVDIPDDLISEAFEEMFEVNVKGYILAAKAALPALYQSKGSAIFTVSNAGFYPGGGGVLYTAGKHAVIGLIKQLAHEWGPRIRVNGIAPG 185          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 60/193 (31.09%), Postives = 94/193 (48.70%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEK--YGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQ--KGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDT-RVNCVAPGFVPTHFAQ 660
            +G  A+VT  ++GIG G+ E L   GASV   SR QK +D+ + + ++ G  V   +C +S+   R+  + KTV    +G++++ V NA +  Y      T E     +  IN +++  L   A P ++  +  +VVFISSI+G       A+YG               E A D  RVN V PG + T   +
Sbjct:    8 EGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFM-KTVSNHFHGKLNILVNNAGIVIYKEAKDYTMED-YSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVE 198          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_STAAW (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            K A+VT +++GIG  +A +L  EG +V ++ +  ++  +  VE++KA G++   I  +V++    K +I + V ++G +DV V NA +      L++ KE   D + + N+K     +Q A P M  Q+  +++ +SS+ G       A Y                E+A     VN VAPGF+ +    AL
Sbjct:    5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL-LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_STAAS (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            K A+VT +++GIG  +A +L  EG +V ++ +  ++  +  VE++KA G++   I  +V++    K +I + V ++G +DV V NA +      L++ KE   D + + N+K     +Q A P M  Q+  +++ +SS+ G       A Y                E+A     VN VAPGF+ +    AL
Sbjct:    5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL-LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_STAAR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            K A+VT +++GIG  +A +L  EG +V ++ +  ++  +  VE++KA G++   I  +V++    K +I + V ++G +DV V NA +      L++ KE   D + + N+K     +Q A P M  Q+  +++ +SS+ G       A Y                E+A     VN VAPGF+ +    AL
Sbjct:    5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL-LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_STAAN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            K A+VT +++GIG  +A +L  EG +V ++ +  ++  +  VE++KA G++   I  +V++    K +I + V ++G +DV V NA +      L++ KE   D + + N+K     +Q A P M  Q+  +++ +SS+ G       A Y                E+A     VN VAPGF+ +    AL
Sbjct:    5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL-LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_STAAM (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fabG PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            K A+VT +++GIG  +A +L  EG +V ++ +  ++  +  VE++KA G++   I  +V++    K +I + V ++G +DV V NA +      L++ KE   D + + N+K     +Q A P M  Q+  +++ +SS+ G       A Y                E+A     VN VAPGF+ +    AL
Sbjct:    5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL-LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_STAAC (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            K A+VT +++GIG  +A +L  EG +V ++ +  ++  +  VE++KA G++   I  +V++    K +I + V ++G +DV V NA +      L++ KE   D + + N+K     +Q A P M  Q+  +++ +SS+ G       A Y                E+A     VN VAPGF+ +    AL
Sbjct:    5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL-LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y452_LISIN (Uncharacterized oxidoreductase Lin0452 OS=Listeria innocua GN=lin0452 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 45/153 (29.41%), Postives = 83/153 (54.25%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYG 549
            + KV ++T ++ GIG   A  L  +GA +V+++R+ + ++K V+ +KA   E I     V+  +  K L++  +E+YG++D   LNA + P  + L   KE   +++ +IN+K  +  +    P    QK   ++  SS+AG +     A+YG
Sbjct:    4 KNKVIIITGASSGIGEATAILLAEKGAKLVLAARRVEKLEKIVQTIKASSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGIMP-NSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYG 155          
The following BLAST results are available for this feature:
BLAST of FC875336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FABG_STAEQ2.041e-1429.693-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
BNZE_PSEPU2.041e-1428.80Cis-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=P... [more]
TRN2_HYONI2.665e-1431.09Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
FABG_STAAW2.665e-1428.653-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAS2.665e-1428.653-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAR2.665e-1428.653-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAN2.665e-1428.653-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAM2.665e-1428.653-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAC2.665e-1428.653-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
Y452_LISIN4.546e-1429.41Uncharacterized oxidoreductase Lin0452 OS=Listeria... [more]

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Properties
Property NameValue
Genbank descriptionC31402G10EF CTVClemen1 Citrus clementina cDNA clone C31402G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875336 ID=FC875336; Name=FC875336; organism=Citrus clementina; type=EST; length=683bp
GATCTAAGGGTTATTCAGAACTGAAAATCCTCATCACCAAAAACAGTAAT
TCATTGGCTTATCCAAATGGAGAAGGTGAACATGGCAAAAAGATTCCAAG
GGAAGGTTGCGGTCGTGACGGCTTCGACTCAAGGCATTGGCTTAGGCGTC
GCTGAAAGACTCGGTTTGGAAGGCGCCTCTGTTGTTATCTCCTCTAGAAA
GCAGAAAAATGTGGACAAAGCAGTTGAGAAACTCAAAGCTCTAGGAATCG
AGGTTATTGGAATTATTTGTCATGTATCAAACGAACAACATAGGAAGAAT
CTCATAGACAAAACTGTTGAGAAATATGGAAGAATAGATGTGTTTGTTTT
AAATGCTGCTGTCAATCCCTATGCTGCTGATCTTCTGAAAACCAAAGAAT
CTGTACTGGACAAGTTATGGGAAATCAATGTCAAATCCAGTATACTTCTT
ATGCAGGATGCTGCACCTCACATGCAGAAGGGTTCTTCAGTCGTTTTCAT
TTCCTCCATAGCTGGTTATCAACCACCGTCAGCCATGGCTATGTATGGAG
TGACTAAGACAGCCCTGTTAGGTTTGACTAAGGCCCTCGCGGCTGAGATG
GCCCCAGATACTCGTGTGAATTGTGTTGCTCCTGGTTTTGTGCCGACACA
CTTTGCTCAGGCCCTTCTAGGCAATGATGCTGT
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