FC875336

Overview
NameFC875336
Unique NameFC875336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y432_LISMO (Uncharacterized oxidoreductase Lmo0432 OS=Listeria monocytogenes GN=lmo0432 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 45/153 (29.41%), Postives = 83/153 (54.25%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYG 549
            + KV ++T ++ GIG   A  L  +GA +V+++R+ + ++K V+ +KA   E I     V+  +  K L++  +E+YG++D   LNA + P  + L   KE   +++ +IN+K  +  +    P    QK   ++  SS+AG +     A+YG
Sbjct:    4 KNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQTIKANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGIMP-NSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYG 155          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 47/185 (25.41%), Postives = 98/185 (52.97%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS--VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPT 648
            KVAVVT ++ GIG  +A++L  +GAS+V+  R ++ +++  ++L      V   +   SN     +++   ++ +G ID+ V+N+A    ++ +        D + ++N+K ++ ++Q   P++ K SS  ++ ++S++G++P    A+YG               E+A    +V  ++PG V T
Sbjct:    7 KVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVSADVTVKSNID---DMLKAVIDHFGHIDI-VVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDT 187          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 47/185 (25.41%), Postives = 98/185 (52.97%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS--VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPT 648
            KVAVVT ++ GIG  +A++L  +GAS+V+  R ++ +++  ++L      V   +   SN     +++   ++ +G ID+ V+N+A    ++ +        D + ++N+K ++ ++Q   P++ K SS  ++ ++S++G++P    A+YG               E+A    +V  ++PG V T
Sbjct:    7 KVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVSADVTVKSNID---DMLKAVIDHFGHIDI-VVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDT 187          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 55/196 (28.06%), Postives = 95/196 (48.47%), Query Frame = 1
Query:   85 AKRFQGKVAVVTASTQGIGLGVAERLGLEGASVV---ISSRKQKNVDKAVEKLKAL----GIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEM-APDTRVNCVAPGFVPT 648
            A + QGKVA+VT    GIG  V     LEGA+V    +   + K+ ++ +E L+        + I I   +  + + K ++D+ V  +G IDV V NAA    A+ +    E  L++++  N+ +   + + A  HM++GS+++  +SI  Y+  + +  Y                ++ +   RVN VAPG V T
Sbjct:   36 ANKLQGKVALVTGGDSGIGRSVCYHFALEGATVAFTFVKGHEDKDANETLELLRKAKSSDAKDPIAIAADLGFDDNCKKVVDQVVNAFGSIDVLVNNAAEQYKASTVEDIDEERLERVFRTNIFAYFFMARHALKHMREGSTIINTTSINAYKGNAKLLDYTATKGAIVAFTRGLSLQLISKGIRVNGVAPGPVWT 231          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHB14_BOVIN (17-beta-hydroxysteroid dehydrogenase 14 OS=Bos taurus GN=HSD17B14 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 55/191 (28.80%), Postives = 90/191 (47.12%), Query Frame = 1
Query:   82 MAKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKG-SSVVFISSIAGYQPPSAMAMY-GVXXXXXXXXXXXXXXEMAPDTRVNCVAPGFVPT 648
            M  R+ GKV +VT   +GIG G+       GA VVI  + +    +AVE+        + ++C V+ E+  + L+ +T+ ++GR+D  V NA  +P      +T      +L E+N+  +  L + A PH++K   +V+ ISS+ G    S    Y                 E     RVNC++PG + T
Sbjct:    3 MGTRYAGKVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEAR-GRAVERELP---GTVFLLCDVTREEDVRTLVSETIRRFGRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLTKLALPHLRKSRGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVNCISPGNIWT 189          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 53/192 (27.60%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            K A+VT +++GIG  +A  L   GA+VV++ S  +   ++ V+++K++G + I +   VSN +  +N+I +T+  +  ID+ V NA +      +++ KE   D +  IN+K      +     M  Q+   ++ +SSI G       A Y                E+A  +  VN +APGF+ T     L
Sbjct:    5 KTAIVTGASRGIGRSIALDLAKSGANVVVNYSGNEAKANEVVDEIKSMGRKAIAVKADVSNPEDVQNMIKETLSVFSTIDILVNNAGITRDNL-IMRMKEDEWDDVININLKGVFNCTKAVTRQMMKQRSGRIINVSSIVGVSGNPGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTDKL 195          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: HDHA_CLOSO (NADP-dependent 7-alpha-hydroxysteroid dehydrogenase OS=Clostridium sordellii PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 59/194 (30.41%), Postives = 88/194 (45.36%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVN--PYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFA 657
            + + KVA+VT++T+GIGL  A +L   GA V +  R+ +   +  +K K  G+ +  +     N    K +ID  ++  G+ID+ V N          DL+   E    +L+  NV S   L +   PHM   KG S+V ISS+ G  P  +   YGV              + A    R N V PG + T  A
Sbjct:    3 KLENKVALVTSATRGIGLASAIKLAQNGAIVYMGVRRLEATQEICDKYKEEGLILKPVFFDAYNIDIYKEMIDTIIKNEGKIDILVNNFGTGRPEKDLDLVNGDEDTFFELFNYNVGSVYRLSKLIIPHMIENKGGSIVNISSVGGSIPDISRIGYGVSKSGVNNITKQIAIQYAKYGIRCNAVLPGLIATDAA 196          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_AQUAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aquifex aeolicus GN=fabG PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 55/201 (27.36%), Postives = 97/201 (48.26%), Query Frame = 1
Query:   82 MAKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKL-KALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLD--KLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            M  + QGKV++VT ST+GIG  +AE+L   G++V+I+    +      E++    G++  G+  ++ +E+      ++       ID+ V NA +     D L  + S+LD  ++ ++N+  + L+ Q++   M  Q+   +V ISS+ G+        Y                E+AP +  VN VAPGF+ T     L
Sbjct:    1 MEIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGI---TRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVL 198          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: VER1_ASPPA (Versicolorin reductase OS=Aspergillus parasiticus GN=ver1 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 42/140 (30.00%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSSVVFISS 507
            R  GKVA+VT + +GIG  +A  LG  GA VV++ +  ++  +K VE++KA G + I I   V + +    L+ +TV  +G +D+   NA +  +   L        D+++ +N +    + ++A  HM++G  ++  SS
Sbjct:    6 RLDGKVALVTGAGRGIGAAIAVALGERGAKVVVNYAHSREAAEKVVEQIKANGTDAIAIQADVGDPEATAKLMAETVRHFGYLDIVSSNAGIVSF-GHLKDVTPEEFDRVFRVNTRGQFFVAREAYRHMREGGRIILTSS 144          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKY-GRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQ--KGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDT-RVNCVAPGFVPTHFAQ 660
            +G  A+VT  ++GIG G+ E L   GASV   SR QK ++  + + ++ G +V   +C +S+   R+ L++     + G++++ V NA +  Y      T E     +  IN +++  L   A P ++  +  +VVFISS++G       A+YG               E A D  RVN V PG + T   +
Sbjct:    8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVED-YSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVE 198          
The following BLAST results are available for this feature:
BLAST of FC875336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
Y432_LISMO4.546e-1429.41Uncharacterized oxidoreductase Lmo0432 OS=Listeria... [more]
Y2049_STAEQ5.937e-1425.41Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES5.937e-1425.41Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
GRDH_DAUCA5.937e-1428.06Glucose and ribitol dehydrogenase OS=Daucus carota... [more]
DHB14_BOVIN5.937e-1428.8017-beta-hydroxysteroid dehydrogenase 14 OS=Bos tau... [more]
FABG_BACSU7.754e-1427.603-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
HDHA_CLOSO1.013e-1330.41NADP-dependent 7-alpha-hydroxysteroid dehydrogenas... [more]
FABG_AQUAE1.013e-1327.363-oxoacyl-[acyl-carrier-protein] reductase OS=Aqui... [more]
VER1_ASPPA1.323e-1330.00Versicolorin reductase OS=Aspergillus parasiticus ... [more]
TRN2_DATST1.323e-1329.17Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]

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Properties
Property NameValue
Genbank descriptionC31402G10EF CTVClemen1 Citrus clementina cDNA clone C31402G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875336 ID=FC875336; Name=FC875336; organism=Citrus clementina; type=EST; length=683bp
GATCTAAGGGTTATTCAGAACTGAAAATCCTCATCACCAAAAACAGTAAT
TCATTGGCTTATCCAAATGGAGAAGGTGAACATGGCAAAAAGATTCCAAG
GGAAGGTTGCGGTCGTGACGGCTTCGACTCAAGGCATTGGCTTAGGCGTC
GCTGAAAGACTCGGTTTGGAAGGCGCCTCTGTTGTTATCTCCTCTAGAAA
GCAGAAAAATGTGGACAAAGCAGTTGAGAAACTCAAAGCTCTAGGAATCG
AGGTTATTGGAATTATTTGTCATGTATCAAACGAACAACATAGGAAGAAT
CTCATAGACAAAACTGTTGAGAAATATGGAAGAATAGATGTGTTTGTTTT
AAATGCTGCTGTCAATCCCTATGCTGCTGATCTTCTGAAAACCAAAGAAT
CTGTACTGGACAAGTTATGGGAAATCAATGTCAAATCCAGTATACTTCTT
ATGCAGGATGCTGCACCTCACATGCAGAAGGGTTCTTCAGTCGTTTTCAT
TTCCTCCATAGCTGGTTATCAACCACCGTCAGCCATGGCTATGTATGGAG
TGACTAAGACAGCCCTGTTAGGTTTGACTAAGGCCCTCGCGGCTGAGATG
GCCCCAGATACTCGTGTGAATTGTGTTGCTCCTGGTTTTGTGCCGACACA
CTTTGCTCAGGCCCTTCTAGGCAATGATGCTGT
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