FC875336

Overview
NameFC875336
Unique NameFC875336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_RICPR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia prowazekii GN=fabG PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 58/200 (29.00%), Postives = 94/200 (47.00%), Query Frame = 1
Query:  100 GKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALG--------IEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            GK +++T ++ GIG  +A  L   G+ V+IS   +       EKLK+LG        IEV    C+++N++   NLI KT      +D+ V NA +       ++ K+   DK+ +IN+K++ +L ++A   M  ++   ++ ISSI G       A Y                E+A     VN VAPGF+ +     L
Sbjct:    6 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSNE-------EKLKSLGNALKDNYTIEV----CNLANKEECSNLISKT----SNLDILVCNAGITSDTL-AIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKL 189          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 52/198 (26.26%), Postives = 97/198 (48.99%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVIS-SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQALLGND 678
            +  V +VT +++GIG  +A  LG  G  V+++ +R  K  ++  ++++A G + +     VS E+  + +I   V+ +G +D+ V NA +      L++ K+S   ++ ++N+    L  Q AA  M  +K   ++ I+S+ G    +  A Y                E A  +  VN VAPGF+ +    + LG+D
Sbjct:   76 ESPVVIVTGASRGIGKAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSKEEDVEAMIKTAVDAWGTVDILVNNAGITRDGL-LMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNAGQANYSAAKAGVIGFTKTVAREYASRNINVNAVAPGFISSDMT-SKLGDD 271          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_SHIFL (3-oxoacyl-[acyl-carrier-protein] reductase OS=Shigella flexneri GN=fabG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 51/194 (26.29%), Postives = 91/194 (46.91%), Query Frame = 1
Query:   94 FQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            F+GK+A+VT +++GIG  +AE L   GA V+ ++  +       + L A G    G++ +V++    +++++K   ++G +D+ V NA +      L++ K+   + + E N+ S   L +     M K     ++ I S+ G       A Y                E+A     VN VAPGF+ T   +AL
Sbjct:    3 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANG---KGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNL-LMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL 192          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_ECOLI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Escherichia coli (strain K12) GN=fabG PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 51/194 (26.29%), Postives = 91/194 (46.91%), Query Frame = 1
Query:   94 FQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            F+GK+A+VT +++GIG  +AE L   GA V+ ++  +       + L A G    G++ +V++    +++++K   ++G +D+ V NA +      L++ K+   + + E N+ S   L +     M K     ++ I S+ G       A Y                E+A     VN VAPGF+ T   +AL
Sbjct:    3 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANG---KGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNL-LMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL 192          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHG_BACME (Glucose 1-dehydrogenase OS=Bacillus megaterium PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 52/195 (26.67%), Postives = 95/195 (48.72%), Query Frame = 1
Query:   82 MAKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSR-KQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAV-NPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKG---SSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPT 648
            M K  +GKV V+T S+ G+G  +A R   E A VV++ R K+   +  +E++K +G E I +   V+ E    NL+   ++++G++DV + NA + NP ++  +   +   +K+ + N+  + L  ++A  +  +     +V+ +SS+    P      Y                E AP   RVN + PG + T
Sbjct:    1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSD--WNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINT 193          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: YHXD_BACSU (Uncharacterized oxidoreductase yhxD OS=Bacillus subtilis GN=yhxD PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 48/185 (25.95%), Postives = 88/185 (47.57%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVIS--SRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPG 636
            +  G+ A+VT    GIG   A     EGA V I+    +Q + ++  E ++A G + + I   +S+E   ++L+ ++  + G +DV  L A       ++       + K +E+NV S   +++ A P++ +G+S++  +S+ GY P   +  Y                ++A    RVN VAPG
Sbjct:   48 KLTGRKALVTGGDSGIGRAAAIAYAREGADVAINYLPEEQPDAEEVKELIEAEGRKAVLIPGDLSDESFCQDLVKQSHHELGGLDVLALVAGKQQAVENIEDLPTEQIYKTFEVNVFSLYWVVKAALPYLPEGASIITTTSVEGYNPSPMLLDYAATKNAIIGFTVGLGKQLASKGIRVNSVAPG 232          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_RICTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 56/198 (28.28%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   94 FQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEV----IGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHM--QKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQAL 666
            F GK +++T ++ GIG  +A  L   G+ V+IS   +K       KLK LG  +    I  +C+++N++   NLI K       +D+ V NA +       ++ K+   DK+ +IN+K++ +L ++A   M  ++   ++ ISSI G       A Y                E+A     VN VAPGF+ +     L
Sbjct:    4 FTGKTSLITGASGGIGSAIARLLHKLGSKVIISGSNEK-------KLKLLGNTLKDNYIIEVCNLANKEECNNLISKI----SNLDILVCNAGITSDTL-AIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKL 189          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: FABG_CHLPN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia pneumoniae GN=fabG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 53/195 (27.18%), Postives = 83/195 (42.56%), Query Frame = 1
Query:  100 GKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQALLGN 675
            GK  +VT  ++GIGLG+ +     GA V I    ++     +E L  LG EV      VS+    K+ + K ++K+ +ID+ V NA +      L++  E     +   N+ S          HM K    S++ ++SI      +    Y                E+A  + RVNC+APGF+ T     L  N
Sbjct:    7 GKKVIVTGGSRGIGLGIVKLFLENGADVEIWGLNEERGQAVIESLTGLGGEVSFARVDVSHNGGVKDCVQKFLDKHNKIDILVNNAGITRDNL-LMRMSEDDWQSVISTNLTSLYYTCSSVIRHMIKARSGSIINVASIVAKIGSAGQTNYAAAKAGIIAFTKSLAKEVAARNIRVNCLAPGFIETDMTSVLNDN 200          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 35/130 (26.92%), Postives = 73/130 (56.15%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGS 486
            +G+VA++T    GIG  ++ + G  GAS+ I  R+++ +D AV  L++LGI+ IG+   V  ++  + +++ T + +G++D+ V NAA   + A       +    + +I+   +  +   A  +++KG+
Sbjct:   11 RGQVALITGGGSGIGFEISSQFGKHGASIAIMGRRKQVLDDAVSALRSLGIQAIGLEGDVRKQEDARRVVEATFQHFGKLDILV-NAAAGNFLAAAEDLSPNGFRTVLDIDAVGTFNMCHAALKYLKKGA 139          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 55/196 (28.06%), Postives = 87/196 (44.39%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKG--SSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQALL 669
            R   KV +VT    G+GL     L  EGA+V +S   ++   +AV +++  G +   +   V+NE H    +D  + +  R+D  V NA +      +  T     D+++EINV+S  L  +     M+K     +V +SSI G       A Y                ++AP + RVN V PG + T   Q +L
Sbjct:    3 RVNDKVVLVTGGAMGMGLTHCTLLAREGATVYLSDMNEELGHQAVAEIRRQGGKAHFLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILT-LKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQIL 197          
The following BLAST results are available for this feature:
BLAST of FC875336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FABG_RICPR1.238e-1129.003-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
FABG_CUPLA1.238e-1126.263-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
FABG_SHIFL1.617e-1126.293-oxoacyl-[acyl-carrier-protein] reductase OS=Shig... [more]
FABG_ECOLI1.617e-1126.293-oxoacyl-[acyl-carrier-protein] reductase OS=Esch... [more]
DHG_BACME1.617e-1126.67Glucose 1-dehydrogenase OS=Bacillus megaterium PE=... [more]
YHXD_BACSU2.112e-1125.95Uncharacterized oxidoreductase yhxD OS=Bacillus su... [more]
FABG_RICTY2.112e-1128.283-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
FABG_CHLPN2.112e-1127.183-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
DECR2_ARATH2.112e-1126.92Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
CPNA_COMTE2.112e-1128.06Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]

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Properties
Property NameValue
Genbank descriptionC31402G10EF CTVClemen1 Citrus clementina cDNA clone C31402G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875336 ID=FC875336; Name=FC875336; organism=Citrus clementina; type=EST; length=683bp
GATCTAAGGGTTATTCAGAACTGAAAATCCTCATCACCAAAAACAGTAAT
TCATTGGCTTATCCAAATGGAGAAGGTGAACATGGCAAAAAGATTCCAAG
GGAAGGTTGCGGTCGTGACGGCTTCGACTCAAGGCATTGGCTTAGGCGTC
GCTGAAAGACTCGGTTTGGAAGGCGCCTCTGTTGTTATCTCCTCTAGAAA
GCAGAAAAATGTGGACAAAGCAGTTGAGAAACTCAAAGCTCTAGGAATCG
AGGTTATTGGAATTATTTGTCATGTATCAAACGAACAACATAGGAAGAAT
CTCATAGACAAAACTGTTGAGAAATATGGAAGAATAGATGTGTTTGTTTT
AAATGCTGCTGTCAATCCCTATGCTGCTGATCTTCTGAAAACCAAAGAAT
CTGTACTGGACAAGTTATGGGAAATCAATGTCAAATCCAGTATACTTCTT
ATGCAGGATGCTGCACCTCACATGCAGAAGGGTTCTTCAGTCGTTTTCAT
TTCCTCCATAGCTGGTTATCAACCACCGTCAGCCATGGCTATGTATGGAG
TGACTAAGACAGCCCTGTTAGGTTTGACTAAGGCCCTCGCGGCTGAGATG
GCCCCAGATACTCGTGTGAATTGTGTTGCTCCTGGTTTTGTGCCGACACA
CTTTGCTCAGGCCCTTCTAGGCAATGATGCTGT
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