FC875336

Overview
NameFC875336
Unique NameFC875336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 55/196 (28.06%), Postives = 87/196 (44.39%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKG--SSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQALL 669
            R   KV +VT    G+GL     L  EGA+V +S   ++   +AV +++  G +   +   V+NE H    +D  + +  R+D  V NA +      +  T     D+++EINV+S  L  +     M+K     +V +SSI G       A Y                ++AP + RVN V PG + T   Q +L
Sbjct:    3 RVNDKVVLVTGGAMGMGLTHCTLLAREGATVYLSDMNEELGHQAVAEIRRQGGKAHFLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILT-LKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQIL 197          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y3106_PSEAE (Uncharacterized oxidoreductase PA3106 OS=Pseudomonas aeruginosa GN=PA3106 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 51/191 (26.70%), Postives = 87/191 (45.55%), Query Frame = 1
Query:   91 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAV-NPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQ-KGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPGFVPTHFA 657
            R  GKVA+VT + +GIGLG++  L  EG  VV++   ++   +  E   ALG     +   V+ E      + + + ++GR+D  V NAA+ NP    L         +   +N+   +LL +   P+++    ++V I+S   +Q       Y                 + PD RVN ++PG++ T  A
Sbjct:    7 RGNGKVALVTGAARGIGLGISAWLIAEGWQVVLADNDRERGARVAE---ALGEHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYLRAHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGPDIRVNALSPGWIDTREA 194          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: DHKR_STRCM (Monensin polyketide synthase putative ketoacyl reductase OS=Streptomyces cinnamonensis PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 55/197 (27.92%), Postives = 88/197 (44.67%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNA--AVNPYAADLLKTKESVLDKLWEINVKSSI--------LLMQDAAPHMQKGSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQ 660
            +VA+VT +T GIGL  A  L  +G  V + +R + +V   V+ L+  G+E  G +  V +       +   V++YGRIDV V NA  +     ADL        D+LW+  + +++         ++       ++   ++ ++S AG Q     A Y                E+AP    VN V PG+V T  AQ
Sbjct:    7 RVALVTGATSGIGLATARLLAAQGHLVFLGARTESDVIATVKALRNDGLEAEGQVLDVRDGASVTAFVQAAVDRYGRIDVLVNNAGRSGGGVTADL-------TDELWDDVIDTNLNSVFRMTRAVLTTGGMRTRERGRIINVASTAGKQGVVLGAPYSASKHGVVGFTKALGNELAPTGITVNAVCPGYVETPMAQ 196          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 58/204 (28.43%), Postives = 91/204 (44.61%), Query Frame = 1
Query:  100 GKVAVVTASTQGIGLGVAERLGLEGASVVI-------SSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK-----GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXE---MAPDTRVNCVAPGFVPTHFAQAL 666
            GKVA+VT + QGIG   AE L L+GA V +         + +  +D+  E  K L I+     C V+++Q  ++   K V+ +GR+D+ V NA VN          E   +K  +IN+ S I        +M K     G  ++ +SS+AG  P +   +Y                    M    R+N + PGFV T   +++
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEKFEPQKTLFIQ-----CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN---------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESI 194          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 58/204 (28.43%), Postives = 91/204 (44.61%), Query Frame = 1
Query:  100 GKVAVVTASTQGIGLGVAERLGLEGASVVI-------SSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK-----GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXE---MAPDTRVNCVAPGFVPTHFAQAL 666
            GKVA+VT + QGIG   AE L L+GA V +         + +  +D+  E  K L I+     C V+++Q  ++   K V+ +GR+D+ V NA VN          E   +K  +IN+ S I        +M K     G  ++ +SS+AG  P +   +Y                    M    R+N + PGFV T   +++
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEPQKTLFIQ-----CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN---------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESI 194          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: KDUD_DICD3 (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Dickeya dadantii (strain 3937) GN=kduD PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 49/192 (25.52%), Postives = 89/192 (46.35%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK---GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPTHFAQ 660
            QGKVA++T    G+G G+A  L   G  +V  +  +    + +EK+ A+G   + +   +S+      L++K V ++G++D+ V NA +     D ++  E   D +  +N+KS   + Q  A    K   G  ++ I+S+  +Q    +  Y                E A  +  VN +APG++ T+  Q
Sbjct:    9 QGKVALITGCDTGLGQGMAVGLAEAGCDIVGVNIVEPK--ETIEKVTAVGRRFLSLTADMSDISGHAALVEKAVAEFGKVDILVNNAGI-IRREDAIEFSEKNWDDVMNLNIKSVFFMSQTVARQFIKQGHGGKIINIASMLSFQGGIPVPSYTASKKRVMGITRIVANEWAKHNINVNAIAPGYMATNNTQ 197          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 52/187 (27.81%), Postives = 87/187 (46.52%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAP-DTRVNCVAPGFVPT 648
            +GKVAVVT   QGIG  +A+     G  VVI+   ++   +  E L+  G++V  +   V++E   KN++ KTVE YG +DV V NAAV    +   +  E   +++  +N+    +  +  A  M K  G  ++ I+S   +Q       Y                 ++    RV  ++PG++ T
Sbjct:    3 EGKVAVVTGGGQGIGAAIAQLFAENGMKVVIAEIDEEAGVEREEMLRERGLDVTFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMSVKSIFERPLEE-WERVIRVNLTGPYICSRYCAEEMIKRGGGVIINIASTRAFQSEPDTEPYSASKGGLVALTHSLAVSLSRYHIRVVSISPGWIET 188          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y2478_STAAM (Uncharacterized oxidoreductase SAV2478 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2478 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 49/195 (25.13%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS--VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPTHFAQALLGND 678
            K+AVVT +  GIG  +A  L  EGA VV++ R +  +     +L    ++V+     V+N++    L+    + +G +D+ V+N+A    ++ +   +    D + ++N+K ++   Q A P M + SS  ++ I+SI+G++   +  +Y                E+A    +V  ++PG V T    A   +D
Sbjct:    7 KIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVP--TDVTNKEEVDELMKIAQQTFGGLDI-VINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAAYNPSD 198          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: Y2266_STAAN (Uncharacterized oxidoreductase SA2266 OS=Staphylococcus aureus (strain N315) GN=SA2266 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 49/195 (25.13%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  103 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLWEINVKSSILLMQDAAPHMQKGSS--VVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMA-PDTRVNCVAPGFVPTHFAQALLGND 678
            K+AVVT +  GIG  +A  L  EGA VV++ R +  +     +L    ++V+     V+N++    L+    + +G +D+ V+N+A    ++ +   +    D + ++N+K ++   Q A P M + SS  ++ I+SI+G++   +  +Y                E+A    +V  ++PG V T    A   +D
Sbjct:    7 KIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVP--TDVTNKEEVDELMKIAQQTFGGLDI-VINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAAYNPSD 198          
BLAST of FC875336 vs. ExPASy Swiss-Prot
Match: PECR_RAT (Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus norvegicus GN=Pecr PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 57/204 (27.94%), Postives = 88/204 (43.14%), Query Frame = 1
Query:   97 QGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKA-----LGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPYAADLLKTKESVLDKLW----EINVKSSILLMQDAAPHMQK--GSSVVFISSIAGYQPPSAMAMYGVXXXXXXXXXXXXXXEMAPDTRVNCVAPGFVPTHFAQALLGN 675
            Q +VAVVT    GIG  ++  L   G +VVI+SRK   +  AV++L+A        +V  I C++  E+   NL+  T+ KYG+I+  V NA         +   E +  K W    E N+  +  + +       K  G S+V I  +     P+A                      +   R+NCVAPG   T ++Q  + N
Sbjct:   17 QNQVAVVTGGATGIGKAISRELLHLGCNVVIASRKLDRLTAAVDELRASQPPSSSTQVTAIQCNIRKEEEVNNLVKSTLAKYGKINFLVNNA-----GGQFMAPAEDITAKGWQAVIETNLTGTFYMCKAVYNSWMKDHGGSIVNIIVLLNNGFPTAAHSGAARAGVYNLTKTMALTWASSGVRINCVAPG---TIYSQTAVDN 212          
The following BLAST results are available for this feature:
BLAST of FC875336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
CPNA_COMS92.112e-1128.06Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
Y3106_PSEAE2.758e-1126.70Uncharacterized oxidoreductase PA3106 OS=Pseudomon... [more]
DHKR_STRCM2.758e-1127.92Monensin polyketide synthase putative ketoacyl red... [more]
PGDH_MACFA3.602e-1128.4315-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
PGDH_HUMAN3.602e-1128.4315-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]
KDUD_DICD33.602e-1125.522-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=D... [more]
Y019_THEMA4.704e-1127.81Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
Y2478_STAAM6.144e-1125.13Uncharacterized oxidoreductase SAV2478 OS=Staphylo... [more]
Y2266_STAAN6.144e-1125.13Uncharacterized oxidoreductase SA2266 OS=Staphyloc... [more]
PECR_RAT6.144e-1127.94Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402G10EF CTVClemen1 Citrus clementina cDNA clone C31402G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875336 ID=FC875336; Name=FC875336; organism=Citrus clementina; type=EST; length=683bp
GATCTAAGGGTTATTCAGAACTGAAAATCCTCATCACCAAAAACAGTAAT
TCATTGGCTTATCCAAATGGAGAAGGTGAACATGGCAAAAAGATTCCAAG
GGAAGGTTGCGGTCGTGACGGCTTCGACTCAAGGCATTGGCTTAGGCGTC
GCTGAAAGACTCGGTTTGGAAGGCGCCTCTGTTGTTATCTCCTCTAGAAA
GCAGAAAAATGTGGACAAAGCAGTTGAGAAACTCAAAGCTCTAGGAATCG
AGGTTATTGGAATTATTTGTCATGTATCAAACGAACAACATAGGAAGAAT
CTCATAGACAAAACTGTTGAGAAATATGGAAGAATAGATGTGTTTGTTTT
AAATGCTGCTGTCAATCCCTATGCTGCTGATCTTCTGAAAACCAAAGAAT
CTGTACTGGACAAGTTATGGGAAATCAATGTCAAATCCAGTATACTTCTT
ATGCAGGATGCTGCACCTCACATGCAGAAGGGTTCTTCAGTCGTTTTCAT
TTCCTCCATAGCTGGTTATCAACCACCGTCAGCCATGGCTATGTATGGAG
TGACTAAGACAGCCCTGTTAGGTTTGACTAAGGCCCTCGCGGCTGAGATG
GCCCCAGATACTCGTGTGAATTGTGTTGCTCCTGGTTTTGTGCCGACACA
CTTTGCTCAGGCCCTTCTAGGCAATGATGCTGT
back to top