FC875338

Overview
NameFC875338
Unique NameFC875338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 2.992e-60
Identity = 117/167 (70.06%), Postives = 125/167 (74.85%), Query Frame = 2
Query:  179 KDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            KDYTDPPP PLFD  EL  WSFYRALIAEFIA            IGYK Q+    + D C GVG LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKVS++RAVMY+VAQCLG I GVG+VK   K  Y   GGGAN +A GYSTG  L AEIIGTFVLV
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLV 177          

HSP 2 Score: 23.0978 bits (48), Expect = 2.992e-60
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  179 TVFSATDPKRNA 190          
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.901e-60
Identity = 116/182 (63.74%), Postives = 134/182 (73.63%), Query Frame = 2
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            ++++  V +HG    KDY DPPP P FD  EL  WSF+RA IAEFIA            IGYK +TDP      CA VG+LGIAW+FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+RA++YM+AQC GAI GVGLVKAF K  Y ++GGGAN +A GY+ G    AE+IGTFVLV
Sbjct:    6 ISEEGQVHQHG----KDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDP------CASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLV 177          

HSP 2 Score: 24.2534 bits (51), Expect = 3.901e-60
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ SA
Sbjct:  179 TVFSATDPKRSA 190          
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.503e-54
Identity = 113/184 (61.41%), Postives = 127/184 (69.02%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            FP  +  G +   +   KDY +PPP PLF+  EL+ WSFYRA IAEFIA            +G K     A N+  CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM+ QCLGAI G G+VK FQ + Y   GGGAN +A GY+ G GL AEIIGTFVLV
Sbjct:   15 FPERQPIGTSAQST--DKDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLV 190          
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.894e-53
Identity = 109/177 (61.58%), Postives = 124/177 (70.06%), Query Frame = 2
Query:  149 GVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            G A  G+   KDY +PPP PLF+A ELT WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAI G G+VK FQ+  Y   GGGAN +  GY+ G GL AEI+GTFVLV
Sbjct:   22 GTAAQGT-EEKDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGV------SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLV 191          
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.894e-53
Identity = 110/184 (59.78%), Postives = 124/184 (67.39%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            F   +  G A  GS   KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G  + T        CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAI G G+VK FQK  Y   GGGAN +A GY+ G GL AEI+GTF+LV
Sbjct:   15 FSERQPIGTAAQGS-DDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSK------CATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILV 191          
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 2.437e-53
Identity = 105/175 (60.00%), Postives = 121/175 (69.14%), Query Frame = 2
Query:  158 EHGSYSAK-DYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            E G+ +AK  Y DPPP PL D  EL KWS YRALIAEF+A            IGYK+Q      VD C GVG LG+AW+FG  IFVLVYCT G+SGGHINPAVT GLF  RK+SLVR V+Y+VAQCLGAI+G G+VK   K  Y   GGGAN ++DGYS    L AEI+GTF+LV
Sbjct:   13 EGGAAAAKAPYWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQR---ATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILV 184          

HSP 2 Score: 23.0978 bits (48), Expect = 2.437e-53
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  682 TVFSATDPRESA 717
            TVFSATDP+ +A
Sbjct:  186 TVFSATDPKRTA 197          
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.474e-53
Identity = 111/184 (60.33%), Postives = 126/184 (68.48%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            FP  +  G +   + S KDY +PPP PLF+  EL  WSF+RA IAEFIA            +G K      ++ + CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G GL AEIIGTFVLV
Sbjct:   15 FPERQPIGTS---AQSDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVK------RSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLV 189          
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.474e-53
Identity = 106/177 (59.89%), Postives = 123/177 (69.49%), Query Frame = 2
Query:  149 GVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            G A  G+   KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ+  Y   GGGAN +A GY+ G GL AEI+GTF+LV
Sbjct:   22 GTAAQGAGDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGV------SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILV 192          
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.231e-53
Identity = 105/184 (57.07%), Postives = 125/184 (67.93%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            F   +  G A  G+   KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGA+ G G+VK FQ+  Y   GGGAN +A GY+ G GL AEI+GTF+LV
Sbjct:   15 FSERQPIGTAAQGAADDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGV------SKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILV 192          
BLAST of FC875338 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.511e-53
Identity = 112/184 (60.87%), Postives = 127/184 (69.02%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 679
            FP  +  G +   + + KDY +PPP P F+  EL+ WSFYRA IAEFIA            +G K     A N+  CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAI G G+VK FQ + Y   GGGAN +A GY+ G GL AEIIGTFVLV
Sbjct:   15 FPERQPIGTS---AQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLV 189          
The following BLAST results are available for this feature:
BLAST of FC875338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PIP26_ORYSJ2.992e-6070.06Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA3.901e-6063.74Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP14_ARATH8.503e-5461.41Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP15_MAIZE1.894e-5361.58Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP12_ORYSJ1.894e-5359.78Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP27_ORYSJ2.437e-5360.00Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH2.474e-5360.33Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_ORYSJ2.474e-5359.89Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE3.231e-5357.07Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_ARATH5.511e-5360.87Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]

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Properties
Property NameValue
Genbank descriptionC31402G12EF CTVClemen1 Citrus clementina cDNA clone C31402G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875338 ID=FC875338; Name=FC875338; organism=Citrus clementina; type=EST; length=724bp
GNGATCCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAA
GGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCT
GTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGG
GGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGC
CGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGA
GCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGT
CTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCG
ACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGC
ATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACAT
TAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGG
TCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGT
GTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGG
TGGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCG
CCGAGATCATCGGCACCTTTGTCTTGGTTTAACTGTCTTCTCGGCCACTG
ATCCCAGAGAAAGCGCAGAGACTC
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