FC875340

Overview
NameFC875340
Unique NameFC875340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875340_ssr23 microsatellite FC875340_ssr23:23..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 4.788e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I++IP+K + TL+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 129
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.788e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I++IP+K + TL+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 129
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 4.788e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I++IP+K + TL+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 129
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 179.874 bits (455), Expect = 4.788e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I++IP+K + TL+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 129
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: HS90A_HORSE (Heat shock protein HSP 90-alpha (Fragment) OS=Equus caballus GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.788e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I++IP+K + TL+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    5 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 118
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: HS90A_BOVIN (Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 4.788e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I++IP+K + TL+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 129
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 179.489 bits (454), Expect = 6.254e-45
Identity = 91/114 (79.82%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I++IP K + TL+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPSKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 129
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: HSP83_ANOGA (Heat shock protein 83 OS=Anopheles gambiae GN=Hsp83 PE=3 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 8.167e-45
Identity = 93/114 (81.58%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKL++  ELFI IIP+K   TL++ID+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    6 EGETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLESGKELFIKIIPNKEAGTLTLIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 119
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: H90A1_DANRE (Heat shock protein HSP 90-alpha 1 OS=Danio rerio GN=hsp90a.1 PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 8.167e-45
Identity = 92/117 (78.63%), Postives = 103/117 (88.03%), Query Frame = 3 
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  +L I +IPD+   TL+IID+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   10 MEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSCKDLKIELIPDQKERTLTIIDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 126
[Close]
BLAST of FC875340 vs. ExPASy Swiss-Prot
Match: HS902_HUMAN (Putative heat shock protein HSP 90-alpha A2 OS=Homo sapiens GN=HSP90AA2 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 4.053e-44
Identity = 90/114 (78.95%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKI +ESLTD SKLD+  EL I++IP+K + TL+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIWYESLTDPSKLDSGKELHINLIPNKQDQTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 129
The following BLAST results are available for this feature:
BLAST of FC875340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HS90A_PIG4.788e-4579.82Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H... [more]
HS90A_PANTR4.788e-4579.82Heat shock protein HSP 90-alpha OS=Pan troglodytes... [more]
HS90A_MACFA4.788e-4579.82Heat shock protein HSP 90-alpha OS=Macaca fascicul... [more]
HS90A_HUMAN4.788e-4579.82Heat shock protein HSP 90-alpha OS=Homo sapiens GN... [more]
HS90A_HORSE4.788e-4579.82Heat shock protein HSP 90-alpha (Fragment) OS=Equu... [more]
HS90A_BOVIN4.788e-4579.82Heat shock protein HSP 90-alpha OS=Bos taurus GN=H... [more]
HS90A_MOUSE6.254e-4579.82Heat shock protein HSP 90-alpha OS=Mus musculus GN... [more]
HSP83_ANOGA8.167e-4581.58Heat shock protein 83 OS=Anopheles gambiae GN=Hsp8... [more]
H90A1_DANRE8.167e-4578.63Heat shock protein HSP 90-alpha 1 OS=Danio rerio G... [more]
HS902_HUMAN4.053e-4478.95Putative heat shock protein HSP 90-alpha A2 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC31402H02EF CTVClemen1 Citrus clementina cDNA clone C31402H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875340 ID=FC875340; Name=FC875340; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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