FC875341 | Citrus Genome Database

Overview


Name	FC875341
Unique Name	FC875341
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	674

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 7.881e-61
Identity = 71/116 (61.21%), Postives = 95/116 (81.90%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F + ++  D+K +PF ++    ++P++ VN  G++K+F  EEIS+M+L KM++ AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAAIAYGL
Sbjct:  102 KRLIGRKFDEKTMAKDIKSFPFHIV-NDKNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGL 216

HSP 2 Score: 108.997 bits (271), Expect = 7.881e-61
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1

Query:   70 NYFILLFLA*VLIMAG-----KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            +YF+ LFL  +   +G     +  G  IGIDLGTTYSCV V ++ RVEIIANDQGNR TPSYV FT+ ERL+G+AAKNQ   NP NT+FD +
Sbjct:   11 SYFVALFLLPMAFASGDDNSTESYGTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENTIFDIK 102

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.882e-61
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKG-EEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR ++D SVQ D+K  PFKV+     KP I V+  G + K FA EEIS+MVL KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   96 KRLIGRTWNDPSVQQDIKFLPFKVVEKKT-KPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 211

HSP 2 Score: 106.301 bits (264), Expect = 7.882e-61
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYV FT + ERLIGDAAKNQ+  NP NTVFDA+
Sbjct:   28 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAK 96

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.882e-61
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKG-EEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR ++D SVQ D+K  PFKV+     KP I V+  G + K FA EEIS+MVL KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   96 KRLIGRTWNDPSVQQDIKFLPFKVVEKKT-KPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 211

HSP 2 Score: 106.301 bits (264), Expect = 7.882e-61
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYV FT + ERLIGDAAKNQ+  NP NTVFDA+
Sbjct:   28 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAK 96

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 7.882e-61
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKG-EEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR ++D SVQ D+K  PFKV+     KP I V+  G + K FA EEIS+MVL KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   97 KRLIGRTWNDPSVQQDIKFLPFKVVEKKT-KPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 212

HSP 2 Score: 106.301 bits (264), Expect = 7.882e-61
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYV FT + ERLIGDAAKNQ+  NP NTVFDA+
Sbjct:   29 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAK 97

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.882e-61
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKG-EEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR ++D SVQ D+K  PFKV+     KP I V+  G + K FA EEIS+MVL KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   96 KRLIGRTWNDPSVQQDIKFLPFKVVEKKT-KPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 211

HSP 2 Score: 106.301 bits (264), Expect = 7.882e-61
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYV FT + ERLIGDAAKNQ+  NP NTVFDA+
Sbjct:   28 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAK 96

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 7.882e-61
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKG-EEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR ++D SVQ D+K  PFKV+     KP I V+  G + K FA EEIS+MVL KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   96 KRLIGRTWNDPSVQQDIKFLPFKVVEKKT-KPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 211

HSP 2 Score: 106.301 bits (264), Expect = 7.882e-61
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYV FT + ERLIGDAAKNQ+  NP NTVFDA+
Sbjct:   28 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAK 96

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.882e-61
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKG-EEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR ++D SVQ D+K  PFKV+     KP I V+  G + K FA EEIS+MVL KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   97 KRLIGRTWNDPSVQQDIKFLPFKVVEKKT-KPYIQVDVGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 212

HSP 2 Score: 106.301 bits (264), Expect = 7.882e-61
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYV FT + ERLIGDAAKNQ+  NP NTVFDA+
Sbjct:   29 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAK 97

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.970e-60
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKG-EEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR ++D SVQ D+K  PFKV+     KP I V+  G + K FA EEIS+MVL KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   96 KRLIGRTWNDPSVQQDIKFLPFKVVEKKT-KPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 211

HSP 2 Score: 104.375 bits (259), Expect = 2.970e-60
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TP YV FT + ERLIGDAAKNQ+  NP NTVFDA+
Sbjct:   28 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPPYVAFTPEGERLIGDAAKNQLTSNPENTVFDAK 96

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: GRP78_YEAST (78 kDa glucose-regulated protein homolog OS=Saccharomyces cerevisiae GN=KAR2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.871e-60
Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIG +++D SVQ D+K  PF V+     KP + V+ KGE+K F  EEIS M+L KM++IAE YLG  + +AVVTVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAAIAYGL
Sbjct:  117 KRLIGLKYNDRSVQKDIKHLPFNVV-NKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGL 231

HSP 2 Score: 105.531 bits (262), Expect = 3.871e-60
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  IGIDLGTTYSCV V ++ + EI+AN+QGNR TPSYV FTD ERLIGDAAKNQVA NP NT+FD +
Sbjct:   50 GTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQNTIFDIK 117

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.871e-60
Identity = 81/117 (69.23%), Postives = 93/117 (79.49%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ DMKL P+K++     KP I V  + GE K F+ EEIS+M+L KM+E AE +LG  IK+AVVTVPAYFND+QRQATKDAGVIAGLNV RIINEPTAAAIAYGL
Sbjct:  103 KRLIGRKFEDKEVQKDMKLVPYKIVNRDG-KPYIQVKVQEGETKVFSPEEISAMILTKMKETAETFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGL 218

HSP 2 Score: 103.219 bits (256), Expect = 3.871e-60
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  IGIDLGTTYSCVGV++  +VEIIANDQGNR TPS+V FT+ ERLIG+AAKNQ A NP  T+FD +
Sbjct:   36 GTVIGIDLGTTYSCVGVYKDGKVEIIANDQGNRITPSWVAFTNDERLIGEAAKNQAAANPERTIFDVK 103

The following BLAST results are available for this feature:

BLAST of FC875341 vs. ExPASy Swiss-Prot

BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
GRP78_SCHPO	7.881e-61	61.21	78 kDa glucose-regulated protein homolog OS=Schizo...	[more]
GRP78_SPETR	7.882e-61	70.09	78 kDa glucose-regulated protein OS=Spermophilus t...	[more]
GRP78_RAT	7.882e-61	70.09	78 kDa glucose-regulated protein OS=Rattus norvegi...	[more]
GRP78_MOUSE	7.882e-61	70.09	78 kDa glucose-regulated protein OS=Mus musculus G...	[more]
GRP78_MESAU	7.882e-61	70.09	78 kDa glucose-regulated protein OS=Mesocricetus a...	[more]
GRP78_HUMAN	7.882e-61	70.09	78 kDa glucose-regulated protein OS=Homo sapiens G...	[more]
GRP78_BOVIN	7.882e-61	70.09	78 kDa glucose-regulated protein OS=Bos taurus GN=...	[more]
GRP78_PONAB	2.970e-60	70.09	78 kDa glucose-regulated protein OS=Pongo abelii G...	[more]
GRP78_YEAST	3.871e-60	65.52	78 kDa glucose-regulated protein homolog OS=Saccha...	[more]
BIP_SPIOL	3.871e-60	69.23	Luminal-binding protein OS=Spinacia oleracea GN=HS...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT