FC875341

Overview
NameFC875341
Unique NameFC875341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP74_LEIMA (Heat shock 70-related protein 4 (Fragment) OS=Leishmania major GN=HSP70.4 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.391e-47
Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  363 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            +Q DMK WPFKVI     KP+I V Y+ + K F+  ++         +    YLG T+K+AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYG+
Sbjct:   81 LQSDMKHWPFKVIVKDG-KPVISVEYQNQTKTFSRGDLGYGAAENEGD-GGGYLGTTVKDAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAIAYGM 182          

HSP 2 Score: 93.5893 bits (231), Expect = 1.391e-47
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1
Query:  142 IDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFD 324
            IDLGTTYSCVGV+++++V+IIANDQGNRTTPSYV FT+TERLIGDA + +    P NTVFD
Sbjct:    8 IDLGTTYSCVGVFKNEQVDIIANDQGNRTTPSYVAFTETERLIGDARRTRWHEPPGNTVFD 68          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_RHOCA (Chaperone protein dnaK OS=Rhodobacter capsulatus GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.145e-46
Identity = 68/116 (58.62%), Postives = 89/116 (76.72%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR +DA V+ D KL P+ ++ G      + V  +GE+  F+  ++S+++L KM+E AE+YLG T+  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   69 KRLIGRRTTDAEVEKDKKLVPYNIVDGGNGDAWVEV--RGEK--FSPAQVSAVILQKMKETAESYLGETVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180          

HSP 2 Score: 77.411 bits (189), Expect = 1.145e-46
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV +    +  +I N +G RTTPS V +TD ERL+G  AK Q   NPTNTVF
Sbjct:    5 IGIDLGTTNSCVAIMDGSQPRVIENSEGARTTPSIVAYTDNERLVGQPAKRQAVTNPTNTVF 66          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 94/116 (81.03%), Postives = 101/116 (87.07%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF+  SVQ DMKLWP +VI GP +KPMI VNYKGE KQFAAEEISSMVLIKM EIAEA+LG ++ +AVVTVPAYFNDSQRQATKD GVIAGLNVMRIINEP  A IAYGL
Sbjct:   72 KRLIGRRFNHPSVQSDMKLWPLQVIPGPGEKPMIVVNYKGESKQFAAEEISSMVLIKMLEIAEAFLGHSVNDAVVTVPAYFNDSQRQATKDTGVIAGLNVMRIINEPNCAQIAYGL 187          

HSP 2 Score: 127.487 bits (319), Expect = 6.362e-29
Identity = 68/86 (79.07%), Postives = 72/86 (83.72%), Query Frame = 1
Query:  109 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDARG*LVGDSAMHQS 366
            MA KG G AIGIDLGTTYSCVGVWQ+DRVEIIANDQGNRTTPSY  FTDT RLIGD AKNQVAMNP+NTVFDA+  L+G    H S
Sbjct:    1 MASKG-GKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYFAFTDTSRLIGD-AKNQVAMNPSNTVFDAKR-LIGRRFNHPS 83          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP7F_CAEEL (Heat shock 70 kDa protein F, mitochondrial OS=Caenorhabditis elegans GN=hsp-6 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.241e-45
Identity = 66/116 (56.90%), Postives = 88/116 (75.86%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D  VQ D+K+ P+K++        +    + + K ++  ++ + VL+KM+E AE+YLG T+ NAVVTVPAYFNDSQRQATKDAG I+GLNV+R+INEPTAAA+AYGL
Sbjct:   99 KRLIGRRYEDPEVQKDLKVVPYKIVKASNGDAWV----EAQGKVYSPSQVGAFVLMKMKETAESYLGTTVNNAVVTVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGL 210          

HSP 2 Score: 68.5514 bits (166), Expect = 1.241e-45
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  109 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVF 321
            ++ K +G  IGIDLGTT SCV + +    ++I N +G RTTPS V FT D ERL+G  AK Q   N  NT+F
Sbjct:   25 LSDKPKGHVIGIDLGTTNSCVSIMEGKTPKVIENAEGVRTTPSTVAFTADGERLVGAPAKRQAVTNSANTLF 96          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_SILPO (Chaperone protein dnaK OS=Silicibacter pomeroyi GN=dnaK PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.241e-45
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR  DA V  D K+ PF ++ G        V  KGE+  ++  +IS+++L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   69 KRLIGRRVDDAEVTKDKKMVPFTIVNGGNGDAW--VEAKGEK--YSPSQISAVILGKMKETAESYLGEEVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180          

HSP 2 Score: 78.1814 bits (191), Expect = 1.241e-45
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  IGIDLGTT SCV +    + ++I N +G RTTPS V FTD ERL+G  AK Q   NP+NT+F  +
Sbjct:    2 GKVIGIDLGTTNSCVAIMDGAQPKVIENSEGARTTPSIVAFTDEERLVGQPAKRQAVTNPSNTIFGVK 69          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_SYNAS (Chaperone protein dnaK OS=Syntrophus aciditrophicus (strain SB) GN=dnaK PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.618e-45
Identity = 70/116 (60.34%), Postives = 85/116 (73.28%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+++   VQ D  + PFK+   P     I V  +     ++  EISSMVL+KM++ AE YLG  I +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRKYNSKEVQYDKSISPFKISEAPNGDAQIEVRGRA----YSPAEISSMVLVKMKQTAEDYLGEKITDAVITVPAYFNDSQRQATKDAGKIAGLNVLRIINEPTAAALAYGL 181          

HSP 2 Score: 71.633 bits (174), Expect = 1.618e-45
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V +     +IAN +GNRTTPS V FT++ ERL+G  AK Q   N  NTV+
Sbjct:    2 GRIIGIDLGTTNSCVAVMEGGDPVVIANQEGNRTTPSIVAFTESGERLVGQVAKRQAVTNSENTVY 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP7M_SCHPO (Heat shock 70 kDa protein, mitochondrial OS=Schizosaccharomyces pombe GN=ssp1 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.107e-45
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF +  VQ D+K  P+K++        +    +   K ++  +I   +L KMRE A  YLG  +KNAVVTVPAYFNDSQRQATK AG IAGLNV+R++NEPTAAA+AYGL
Sbjct:  118 KRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDAWL----EARGKTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGL 229          

HSP 2 Score: 76.6406 bits (187), Expect = 2.107e-45
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  118 KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVF 321
            K +GP IGIDLGTT SC+ + +    ++IAN +G RTTPS V FT D ERL+G +AK Q  +NP NT F
Sbjct:   47 KVKGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVINPENTFF 115          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_SACD2 (Chaperone protein dnaK OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dnaK PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.108e-45
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+D  VQ D+ + P+K+IA  AD     V  KG++K  A  +IS+ VL KM++ AE YLG T+  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+
Sbjct:   70 KRLIGRKFTDDVVQKDISMVPYKIIA--ADNGDAWVEVKGDKK--APPQISAEVLKKMKKTAEDYLGETVTEAVITVPAYFNDSQRQATKDAGKIAGLDVKRIINEPTAAALAYGM 181          

HSP 2 Score: 72.4034 bits (176), Expect = 2.108e-45
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV + + ++ ++I N +G+RTTPS V FT D E L+G +AK Q   NP NT+F
Sbjct:    2 GKIIGIDLGTTNSCVSILEGNKAKVIENSEGDRTTPSIVAFTEDGEILVGQSAKRQAVTNPQNTLF 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_PARDP (Chaperone protein dnaK OS=Paracoccus denitrificans (strain Pd 1222) GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.108e-45
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR +DA V+ D KL P+ ++ G      + V  +G++  ++  +IS+ +L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   69 KRLIGRRTTDAEVEKDKKLVPYAIVDGGNGDAWVEV--RGDK--YSPSQISAFILQKMKETAESYLGEPVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180          

HSP 2 Score: 77.7962 bits (190), Expect = 2.108e-45
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV +    + ++I N +G RTTPS V FTD+ERL+G  AK Q   NP+NTVF
Sbjct:    5 IGIDLGTTNSCVAIMDGSQPKVIENSEGARTTPSIVAFTDSERLVGQPAKRQAVTNPSNTVF 66          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_GLUOX (Chaperone protein dnaK OS=Gluconobacter oxydans GN=dnaK PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.108e-45
Identity = 67/116 (57.76%), Postives = 88/116 (75.86%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +VQ D ++ P+ ++ G  D     V  +GE+  +A  +I++ VL KM+E AE+YLG T+  AV+TVPAYFND+QRQAT+DAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRRYDDPTVQKDKEMVPYAIVRG--DNGDAWVEARGEK--YAPSQIAAYVLGKMKETAESYLGETVSQAVITVPAYFNDAQRQATRDAGKIAGLEVLRIINEPTAAALAYGL 181          

HSP 2 Score: 75.0998 bits (183), Expect = 2.108e-45
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV V + D  ++I N +G RTTPS V FTD  ERL+G AAK Q   NP NT++
Sbjct:    5 IGIDLGTTNSCVAVREGDETKVIENSEGARTTPSMVAFTDNGERLVGQAAKRQAVTNPANTLY 67          
The following BLAST results are available for this feature:
BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP74_LEIMA1.391e-4759.62Heat shock 70-related protein 4 (Fragment) OS=Leis... [more]
DNAK_RHOCA1.145e-4658.62Chaperone protein dnaK OS=Rhodobacter capsulatus G... [more]
HSP70_DAUCA1.507e-4681.03Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]
HSP7F_CAEEL1.241e-4556.90Heat shock 70 kDa protein F, mitochondrial OS=Caen... [more]
DNAK_SILPO1.241e-4558.62Chaperone protein dnaK OS=Silicibacter pomeroyi GN... [more]
DNAK_SYNAS1.618e-4560.34Chaperone protein dnaK OS=Syntrophus aciditrophicu... [more]
HSP7M_SCHPO2.107e-4556.03Heat shock 70 kDa protein, mitochondrial OS=Schizo... [more]
DNAK_SACD22.108e-4562.07Chaperone protein dnaK OS=Saccharophagus degradans... [more]
DNAK_PARDP2.108e-4556.90Chaperone protein dnaK OS=Paracoccus denitrificans... [more]
DNAK_GLUOX2.108e-4557.76Chaperone protein dnaK OS=Gluconobacter oxydans GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT
back to top