FC875341

Overview
NameFC875341
Unique NameFC875341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 5.673e-74
Identity = 88/116 (75.86%), Postives = 100/116 (86.21%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+D  VQ DMKLWPF+VI   A KP + V+YKGE+K F  EEISSMVL KM+E AEA+LG ++ NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   73 KRLIGRKFNDPVVQSDMKLWPFQVI-NEAGKPKVLVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHSVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 187

HSP 2 Score: 127.487 bits (319), Expect = 5.673e-74
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP NTVFDA+
Sbjct:    5 KGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAK 73
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 171.785 bits (434), Expect = 5.673e-74
Identity = 88/116 (75.86%), Postives = 99/116 (85.34%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+D  VQ DMKLWPF+VI   A KP + V+YKGE+K F  EEISSMVL KM+E AEA+LG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   73 KRLIGRKFNDPVVQSDMKLWPFQVI-NEAGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHNVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 187

HSP 2 Score: 127.487 bits (319), Expect = 5.673e-74
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP NTVFDA+
Sbjct:    5 KGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAK 73
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 7.396e-74
Identity = 85/116 (73.28%), Postives = 93/116 (80.17%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D  VQ DM  WPF VI     +P + V YKGE K F  EE+SSMVL KM+EIAEAYLG T+ NAV+TVPAYFNDSQRQATKDAG I+GLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRRFDDHVVQSDMNDWPFNVI-NDNTRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVNNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 132.88 bits (333), Expect = 7.396e-74
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            +GPA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNPTNTVFDA+
Sbjct:    3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAK 71
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_TRYCR (Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.397e-74
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+FSD  VQ DMK WPFKVI    DKP+I V ++GE K F  EE+SSMVL KM+EIAE+YLG  +K AVVTVPAYFNDSQRQATKDAG IAGL V+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFSDPVVQSDMKHWPFKVITKGDDKPVIQVQFRGETKTFNPEEVSSMVLSKMKEIAESYLGKQVKKAVVTVPAYFNDSQRQATKDAGTIAGLEVLRIINEPTAAAIAYGL 186

HSP 2 Score: 127.487 bits (319), Expect = 7.397e-74
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGVWQ++RVEIIANDQGNRTTPSYV FTD+ERLIGDAAKNQVAMNP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVWQNERVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPRNTVFDAK 71
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 7.399e-74
Identity = 86/116 (74.14%), Postives = 99/116 (85.34%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F DA+VQ DMK WPF+V++    KP I V YKGE+K F  EE+SSMVL KM+E AEAYLG T++NAV+TVPAYFNDSQRQATKDAG I+GLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFEDATVQADMKHWPFEVVSD-GGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 127.102 bits (318), Expect = 7.399e-74
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            + PA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDT+RLIGDAAKNQVAMNP NT+FDA+
Sbjct:    3 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTDRLIGDAAKNQVAMNPNNTIFDAK 71
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 9.649e-74
Identity = 87/116 (75.00%), Postives = 97/116 (83.62%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F DA+VQ DMK WPF+V++    KP I V YK E+K F  EEISSMVL KM+E AEAYLG T+ NAV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFDDAAVQSDMKHWPFEVVSADG-KPKIEVTYKDEKKTFFPEEISSMVLTKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 127.872 bits (320), Expect = 9.649e-74
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            + PA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNPT T+FDA+
Sbjct:    3 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTQTIFDAK 71
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.259e-73
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ DMK WPF+V+    DKP + VNYKGE + F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFGDPVVQSDMKHWPFQVV-NDGDKPKVQVNYKGENRSFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 124.405 bits (311), Expect = 1.259e-73
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAK 71
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_PLACB (Heat shock 70 kDa protein OS=Plasmodium cynomolgi (strain Berok) PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.641e-73
Identity = 89/116 (76.72%), Postives = 102/116 (87.93%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+++SVQ DMK WPF V +G  +KPMI V+Y+GE+K F  EEISSMVL KM+E AEA+LG +IKNAV+TVPAYFNDSQRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   82 KRLIGRKFTESSVQSDMKHWPFTVKSGVDEKPMIEVSYQGEKKLFHPEEISSMVLQKMKENAEAFLGKSIKNAVITVPAYFNDSQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 197

HSP 2 Score: 122.094 bits (305), Expect = 1.641e-73
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGVW+++ V+IIANDQGNRTTPSYV FTDTERLIGDAAKNQVA NP NTVFDA+
Sbjct:   17 AIGIDLGTTYSCVGVWRNENVDIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAK 82
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.641e-73
Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ DMK WPF+VI    DKP + V+YKGE K F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFGDPVVQADMKHWPFRVI-NDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVSNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 124.405 bits (311), Expect = 1.641e-73
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAK 71
[Close]
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.641e-73
Identity = 90/116 (77.59%), Postives = 96/116 (82.76%), Query Frame = 3 
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF DA+VQ DMK WPF+V A    KP I V YKGE K F  EE+SSMVL KMRE AEAYLG T+ +AVVTVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRRFDDATVQSDMKHWPFEVFAENG-KPRIRVEYKGERKSFYPEEVSSMVLTKMRETAEAYLGGTVTDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 124.79 bits (312), Expect = 1.641e-73
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FT++ERLIGDAAKNQVAMNP NT+FDA+
Sbjct:    5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTESERLIGDAAKNQVAMNPNNTIFDAK 71
The following BLAST results are available for this feature:
BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71L_RAT5.673e-7475.86Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_MOUSE5.673e-7475.86Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP7C_ORYLA7.396e-7473.28Heat shock cognate 71 kDa protein OS=Oryzias latip... [more]
HSP70_TRYCR7.397e-7475.00Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=... [more]
HSP7D_MANSE7.399e-7474.14Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HSP7D_DROME9.649e-7475.00Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP71_RAT1.259e-7375.86Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP70_PLACB1.641e-7376.72Heat shock 70 kDa protein OS=Plasmodium cynomolgi ... [more]
HS71B_PIG1.641e-7376.72Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HSP7A_DROME1.641e-7377.59Heat shock 70 kDa protein cognate 1 OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionC31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT
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