FC875341 | Citrus Genome Database

Overview


Name	FC875341
Unique Name	FC875341
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	674

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10212	contig	Ccv1_Contig10212:1..675.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_PLAFA (Heat shock 70 kDa protein OS=Plasmodium falciparum PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.140e-73
Identity = 89/116 (76.72%), Postives = 101/116 (87.07%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+++SVQ DMK WPF V +G  +KPMI V Y+GE+K F  EEISSMVL KM+E AEA+LG +IKNAV+TVPAYFNDSQRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   82 KRLIGRKFTESSVQSDMKHWPFTVKSGVDEKPMIEVTYQGEKKLFHPEEISSMVLQKMKENAEAFLGKSIKNAVITVPAYFNDSQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 197

HSP 2 Score: 122.094 bits (305), Expect = 2.140e-73
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGVW+++ V+IIANDQGNRTTPSYV FTDTERLIGDAAKNQVA NP NTVFDA+
Sbjct:   17 AIGIDLGTTYSCVGVWRNENVDIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAK 82

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.140e-73
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+DA VQ DMK +PFKV+   + KP++ V +KGEEKQF  EEISSMVL KMRE AEAYLG T+ NAV+TVPAYFNDSQRQATKDAG+IAGLNV+RIINEPTA  IAYGL
Sbjct:   69 KRLIGRKFNDAEVQADMKHFPFKVVE-KSGKPIVQVEFKGEEKQFTPEEISSMVLTKMRETAEAYLGGTVNNAVITVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAGGIAYGL 183

HSP 2 Score: 124.405 bits (311), Expect = 2.140e-73
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PA+GIDLGTTYSCVG+++ DR+EIIANDQGNRTTPS+V FTDTERLIGDAAKNQVAMNP NTVFDA+
Sbjct:    3 PAVGIDLGTTYSCVGIFRDDRIEIIANDQGNRTTPSFVAFTDTERLIGDAAKNQVAMNPINTVFDAK 69

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HS71B_BOVIN (Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.141e-73
Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ DMK WPF+VI    DKP + V+YKGE K F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFGDPVVQSDMKHWPFRVI-NDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 124.405 bits (311), Expect = 2.141e-73
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAK 71

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.141e-73
Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ DMK WPF+VI    DKP + V+YKGE K F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFGDPVVQSDMKHWPFRVI-NDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 124.405 bits (311), Expect = 2.141e-73
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAK 71

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HS71A_BOVIN (Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA1A PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.141e-73
Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ DMK WPF+VI    DKP + V+YKGE K F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFGDPVVQSDMKHWPFRVI-NDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 124.405 bits (311), Expect = 2.141e-73
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAK 71

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.792e-73
Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ DMK WPF+VI    DKP + V+YKGE K F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFGDPVVQSDMKHWPFQVI-NDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 124.405 bits (311), Expect = 2.792e-73
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAK 71

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 172.555 bits (436), Expect = 2.792e-73
Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ DMK WPF+VI    DKP + V+YKGE K F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFGDPVVQSDMKHWPFQVI-NDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 124.405 bits (311), Expect = 2.792e-73
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAK 71

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.792e-73
Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF +  VQ DMK WPFKV++    KP I V+YKGE K F  EEISSMVL+KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV RIINEPTAAAIAYGL
Sbjct:   73 KRLIGRRFDEPVVQADMKHWPFKVVS-EGGKPKIQVDYKGENKTFFPEEISSMVLVKMKEIAEAYLGHKVSNAVITVPAYFNDSQRQATKDAGVIAGLNVQRIINEPTAAAIAYGL 187

HSP 2 Score: 124.02 bits (310), Expect = 2.792e-73
Identity = 58/66 (87.88%), Postives = 64/66 (96.97%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            +IGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP+NTVFDA+
Sbjct:    8 SIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPSNTVFDAK 73

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP74_ANOAL (Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.792e-73
Identity = 86/116 (74.14%), Postives = 95/116 (81.90%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  +Q DMK WPF V+     KP I V +KGE K FA EEISSMVL KM+E AEAYLG ++KNAV+TVPAYFNDSQRQATKDAG IAGLNVMRIINEPTAAA+AYGL
Sbjct:   69 KRLIGRKFDDPKIQADMKHWPFTVV-NDGGKPKIRVEFKGERKTFAPEEISSMVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGL 183

HSP 2 Score: 126.331 bits (316), Expect = 2.792e-73
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV F+DTERLIGDAAKNQVAMNPTNTVFDA+
Sbjct:    4 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMNPTNTVFDAK 69

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.792e-73
Identity = 86/116 (74.14%), Postives = 95/116 (81.90%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  +Q DMK WPF V+     KP I V +KGE K FA EEISSMVL KM+E AEAYLG ++KNAV+TVPAYFNDSQRQATKDAG IAGLNVMRIINEPTAAA+AYGL
Sbjct:   69 KRLIGRKFDDPKIQADMKHWPFTVV-NDCGKPKIRVEFKGERKTFAPEEISSMVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGL 183

HSP 2 Score: 126.331 bits (316), Expect = 2.792e-73
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV F+DTERLIGDAAKNQVAMNPTNTVFDA+
Sbjct:    4 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMNPTNTVFDAK 69

The following BLAST results are available for this feature:

BLAST of FC875341 vs. ExPASy Swiss-Prot

BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP70_PLAFA	2.140e-73	76.72	Heat shock 70 kDa protein OS=Plasmodium falciparum...	[more]
HSP70_TRIRU	2.140e-73	75.00	Heat shock 70 kDa protein OS=Trichophyton rubrum G...	[more]
HS71B_BOVIN	2.141e-73	76.72	Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA...	[more]
HS71B_BOSMU	2.141e-73	76.72	Heat shock 70 kDa protein 1B OS=Bos mutus grunnien...	[more]
HS71A_BOVIN	2.141e-73	76.72	Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA...	[more]
HSP71_PONAB	2.792e-73	76.72	Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP...	[more]
HSP71_HUMAN	2.792e-73	76.72	Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN...	[more]
HSP71_ORYLA	2.792e-73	76.72	Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=...	[more]
HSP74_ANOAL	2.792e-73	74.14	Heat shock protein 70 B2 OS=Anopheles albimanus GN...	[more]
HSP72_ANOAL	2.792e-73	74.14	Heat shock protein 70 A2 OS=Anopheles albimanus GN...	[more]

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Properties


Property Name	Value
Genbank description	C31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT