FC875341

Overview
NameFC875341
Unique NameFC875341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_THEYD (Chaperone protein dnaK OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.710e-41
Identity = 62/116 (53.45%), Postives = 84/116 (72.41%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRL+GR+++   VQ   K  P+K++  P     + +      K+++  EIS+M+L K+++ AE YLG  +  AV+TVPAYF+DSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   70 KRLMGRKYNSQEVQEAKKRLPYKIVEAPNGDAHVEIM----GKRYSPPEISAMILQKLKQAAEDYLGEPVTEAVITVPAYFDDSQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 181          

HSP 2 Score: 68.9366 bits (167), Expect = 1.710e-41
Identity = 37/69 (53.62%), Postives = 42/69 (60.87%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAR 330
            G AIGIDLGTT S V V       +I N +G RTTPS V FTD  ERL+G  AK Q   NP NT+F  +
Sbjct:    2 GKAIGIDLGTTNSVVAVVVGGEPVVIPNQEGQRTTPSVVAFTDKGERLVGQVAKRQAITNPENTIFSIK 70          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_AERHH (Chaperone protein dnaK OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.228e-41
Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D  VQ D+++ P+ +    AD     V  KG  K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA AYG+
Sbjct:   70 KRLIGRRFEDDEVQRDLEIMPYAI--AKADNGDAWVEVKG--KKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAAFAYGV 181          

HSP 2 Score: 67.3958 bits (163), Expect = 2.228e-41
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV +   D   +I N +G+RTTPS + + D  E L+G  AK Q   NP NT+F
Sbjct:    2 GKIIGIDLGTTNSCVAILDGDHARVIENAEGDRTTPSIIAYADDGEILVGQPAKRQAITNPKNTLF 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_PSESM (Chaperone protein dnaK OS=Pseudomonas syringae pv. tomato GN=dnaK PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.228e-41
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  303 PHEHRL*CKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            PH      KRLIGR+F +  VQ D+++ P+K++        + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+
Sbjct:   62 PHNTLYAVKRLIGRKFDEQVVQKDIQMVPYKIVKADNGDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGM 181          

HSP 2 Score: 66.6254 bits (161), Expect = 2.228e-41
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGF-TDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV + ++  V++I N +G RTTPS + +  D E L+G +AK Q   NP NT++
Sbjct:    2 GRIIGIDLGTTNSCVSILENGNVKVIDNAEGTRTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLY 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_PSEU2 (Chaperone protein dnaK OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dnaK PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.228e-41
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  303 PHEHRL*CKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            PH      KRLIGR+F +  VQ D+++ P+K++        + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+
Sbjct:   62 PHNTLYAVKRLIGRKFEEDVVQKDIQMVPYKIVKADNGDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGM 181          

HSP 2 Score: 67.0106 bits (162), Expect = 2.228e-41
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGF-TDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV + ++  V++I N +G RTTPS + +  D E L+G +AK Q   NP NT++
Sbjct:    2 GRIIGIDLGTTNSCVSILENGNVKVIENAEGTRTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLY 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_PSYIN (Chaperone protein dnaK OS=Psychromonas ingrahamii (strain 37) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.228e-41
Identity = 67/116 (57.76%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D  VQ D+K+ P+K++   AD     V   G +   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA AYG+
Sbjct:   69 KRLIGRRYEDEEVQRDIKIMPYKIVK--ADNGDAWVEAHGNK--MAPPQISAEVLKKMKKTAEDYLGEKVTGAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAFAYGV 180          

HSP 2 Score: 68.5514 bits (166), Expect = 2.228e-41
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V      +II N +G RTTPS + +T+ E L+G  AK Q   NP NT+F
Sbjct:    2 GKIIGIDLGTTNSCVSVLVGGVAKIIENAEGERTTPSIIAYTEGETLVGQPAKRQSVTNPQNTLF 66          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_METRJ (Chaperone protein dnaK OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=dnaK PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.228e-41
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR + D   Q D  L P+K+  G      +    + + K+++  +IS+  L KM+E AE++LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRTYDDPMTQKDKGLVPYKIARGDNGDAWV----EADGKKYSPSQISAFTLQKMKETAESHLGQPVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 181          

HSP 2 Score: 70.0922 bits (170), Expect = 2.228e-41
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V +  + ++I N +G RTTPS V FTD  ERL+G  AK Q   NP  T F
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGTQPKVIENSEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFF 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_METNO (Chaperone protein dnaK OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=dnaK PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.229e-41
Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVI-AGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR + D   Q D  L P+ +  AG  D  +       + KQF+  +IS+  L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRTYDDPMTQKDKGLVPYAITRAGNGDAWVAA-----DGKQFSPSQISAFTLQKMKETAESYLGQPVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 181          

HSP 2 Score: 70.0922 bits (170), Expect = 2.229e-41
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V +  + ++I N +G RTTPS V FTD  ERL+G  AK Q   NP+ T F
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGTQPKVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPSRTFF 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_BDEBA (Chaperone protein dnaK OS=Bdellovibrio bacteriovorus GN=dnaK PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.229e-41
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KR IGRRF +  +Q ++KL P+ V+A   D       +K + K  + EEI + VL K++++AE YLG  +  AVVTVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYG+
Sbjct:   70 KRFIGRRFEE--IQEEIKLVPYTVVAKGND-----CAFKVQGKTASPEEIGAAVLAKLKKVAEDYLGEPVTEAVVTVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGM 178          

HSP 2 Score: 71.633 bits (174), Expect = 2.229e-41
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAR 330
            G  IGIDLGTT SCV + +    +++ N++G RTTPS V +T D +RL+G  AK Q   NP NT++ A+
Sbjct:    2 GKIIGIDLGTTNSCVAIMEGGEPKVLVNEEGARTTPSVVAYTKDGDRLVGQIAKRQAVTNPENTIYSAK 70          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_RHOFD (Chaperone protein dnaK OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=dnaK PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.903e-41
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F++  VQ D+ L P+K+ A  AD     V  +G   + A +++S+ VL KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRKFTEKEVQKDINLMPYKIAA--ADNGDAWVEVRGN--RMAPQQVSADVLRKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAYGL 181          

HSP 2 Score: 63.5438 bits (153), Expect = 2.903e-41
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGF-TDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV + + +  ++I N +G RTTPS + +  D E L+G +AK Q   NP NT++
Sbjct:    2 GRIIGIDLGTTNSCVAIMEGNTPKVIENSEGARTTPSIIAYQEDGEVLVGASAKRQAVTNPKNTLY 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_NITHX (Chaperone protein dnaK OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.904e-41
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D +V+ D  L P+K+         + V    + K ++  +IS+  L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRRYDDPTVEKDKHLVPYKIAKAGNGDAWVEV----DGKTYSPSQISAFTLQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 181          

HSP 2 Score: 67.781 bits (164), Expect = 2.904e-41
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V      ++I N +G RTTPS V F+D  ERL+G  AK Q   NP  T+F
Sbjct:    2 GKVIGIDLGTTNSCVAVMDGKTPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTIF 67          
The following BLAST results are available for this feature:
BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_THEYD1.710e-4153.45Chaperone protein dnaK OS=Thermodesulfovibrio yell... [more]
DNAK_AERHH2.228e-4158.62Chaperone protein dnaK OS=Aeromonas hydrophila sub... [more]
DNAK_PSESM2.228e-4152.42Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]
DNAK_PSEU22.228e-4152.42Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]
DNAK_PSYIN2.228e-4157.76Chaperone protein dnaK OS=Psychromonas ingrahamii ... [more]
DNAK_METRJ2.228e-4153.45Chaperone protein dnaK OS=Methylobacterium radioto... [more]
DNAK_METNO2.229e-4156.41Chaperone protein dnaK OS=Methylobacterium nodulan... [more]
DNAK_BDEBA2.229e-4156.03Chaperone protein dnaK OS=Bdellovibrio bacteriovor... [more]
DNAK_RHOFD2.903e-4158.62Chaperone protein dnaK OS=Rhodoferax ferrireducens... [more]
DNAK_NITHX2.904e-4155.17Chaperone protein dnaK OS=Nitrobacter hamburgensis... [more]

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Properties
Property NameValue
Genbank descriptionC31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT
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